Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1466 170 2e-37 seq1258 170 2e-37 seq1155 170 2e-37 seq630 161 8e-35 seq1253 136 3e-27 >seq1466 Length=125466 Score = 170 bits (188), Expect = 2e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||| || ||||| ||||| | ||| ||||| | | ||||| |||| || Sbjct 71659 ACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACCATCTTCA 71600 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || || ||||||| | ||||||||| || ||||| |||||||| |||||| Sbjct 71599 AGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGA 71540 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| |||||| ||| ||||| | || ||||||||||| | ||||| Sbjct 71539 ATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGTTTTT 71480 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||||| ||| |||||||| Sbjct 71479 CCAGTTAATGTTTTTATAAAAATCTGCAT 71451 >seq1258 Length=100613 Score = 170 bits (188), Expect = 2e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||| || ||||| ||||| | ||| ||||| | | ||||| |||| || Sbjct 40418 ACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACCATCTTCA 40359 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || || ||||||| | ||||||||| || ||||| |||||||| |||||| Sbjct 40358 AGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGA 40299 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| |||||| ||| ||||| | || ||||||||||| | ||||| Sbjct 40298 ATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGTTTTT 40239 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||||| ||| |||||||| Sbjct 40238 CCAGTTAATGTTTTTATAAAAATCTGCAT 40210 >seq1155 Length=100669 Score = 170 bits (188), Expect = 2e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||| || ||||| ||||| | ||| ||||| | | ||||| |||| || Sbjct 60252 ACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACCATCTTCA 60311 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || || ||||||| | ||||||||| || ||||| |||||||| |||||| Sbjct 60312 AGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGA 60371 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| |||||| ||| ||||| | || ||||||||||| | ||||| Sbjct 60372 ATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGTTTTT 60431 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||||| ||| |||||||| Sbjct 60432 CCAGTTAATGTTTTTATAAAAATCTGCAT 60460 >seq630 Length=36350 Score = 161 bits (178), Expect = 8e-35 Identities = 170/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 101246 CCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATA 101305 |||||||| || | ||| | ||| ||||| ||||| ||||| | |||||| || | | Sbjct 1 CCTCTTAATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGG 60 Query 101306 GTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATG 101365 ||||| |||| |||||||| || || ||||| ||||| | |||||||| || || || Sbjct 61 GTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTATA 120 Query 101366 CCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCA 101425 ||||| || ||||| || || ||||||| |||| | ||||||||| | ||||||||| Sbjct 121 CCTTCCTTGTCTTGGATCTTAGATTTTACATTTTCAATAGTGTCAGAAGGATCCACTTCA 180 Query 101426 AGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| || |||| ||||| | ||| |||||||| Sbjct 181 AGTGTAATAGTTTTTCCAGTTAGTGTTTTAATAAAAATCTGCAT 224 >seq1253 Length=11614 Score = 136 bits (150), Expect = 3e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| || | ||| | ||| ||||| ||||| ||||| | |||||| || | Sbjct 11412 CCACCTCTTAATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAA 11471 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| |||||||| || || ||||| ||||| | |||||||| || || Sbjct 11472 AGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGT 11531 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || || |||||| |||| | ||||||||| | |||||| Sbjct 11532 ATACCTTCCTTGTCTTGGATCTTAGATTTTACGTTTTCAATAGTGTCAGAAGGATCCACT 11591 Query 101423 TCAAGAGTGACCGTTTTGCCGGT 101445 ||||| || | ||||| || || Sbjct 11592 TCAAGTGTAATAGTTTTTCCAGT 11614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396270493874409