Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq630 167 4e-36 seq1466 145 1e-29 seq1258 145 1e-29 seq1253 145 1e-29 seq1155 145 1e-29 >seq630 Length=36350 Score = 167 bits (184), Expect = 4e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 193137 CCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAAC 193196 ||||| |||||||| || ||||| | || | || || || ||| ||||| || | Sbjct 1 CCTCTTAATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGG 60 Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256 ||||| ||| || ||||||||||| |||||||| ||||| |||||||| |||||||| Sbjct 61 GTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTATA 120 Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 ||||| || ||||| || || | ||||| |||| |||||| || |||| || ||||| Sbjct 121 CCTTCCTTGTCTTGGATCTTAGATTTTACATTTTCAATAGTGTCAGAAGGATCCACTTCA 180 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || |||||||| || ||||| ||||| | ||| || |||||| Sbjct 181 AGTGTAATAGTTTTTCCAGTTAGTGTTTTAATAAAAATCTGCATT 225 >seq1466 Length=125466 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || | | || ||||||| ||| | ||| | || || || |||||| || Sbjct 71680 ATACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCT 71621 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||||| ||| || | ||| ||||| || || || | |||||||||||| || Sbjct 71620 GAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGT 71561 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||| |||| | |||| |||||||| || | ||| Sbjct 71560 GGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCA 71501 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| |||||||| || |||| ||||||| ||| || ||||| Sbjct 71500 ACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 71451 >seq1258 Length=100613 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || | | || ||||||| ||| | ||| | || || || |||||| || Sbjct 40439 ATACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCT 40380 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||||| ||| || | ||| ||||| || || || | |||||||||||| || Sbjct 40379 GAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGT 40320 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||| |||| | |||| |||||||| || | ||| Sbjct 40319 GGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCA 40260 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| |||||||| || |||| ||||||| ||| || ||||| Sbjct 40259 ACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 40210 >seq1253 Length=11614 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| |||||||| || ||||| | || | || || || ||| ||||| || Sbjct 11412 CCACCTCTTAATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAA 11471 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| ||| || ||||||||||| |||||||| ||||| |||||||| |||||| Sbjct 11472 AGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGT 11531 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||| || ||||| || || | ||||| ||| |||||| || |||| || ||| Sbjct 11532 ATACCTTCCTTGTCTTGGATCTTAGATTTTACGTTTTCAATAGTGTCAGAAGGATCCACT 11591 Query 193314 TCTAGAGTTATAGTTTTACCTGT 193336 || || || |||||||| || || Sbjct 11592 TCAAGTGTAATAGTTTTTCCAGT 11614 >seq1155 Length=100669 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || | | || ||||||| ||| | ||| | || || || |||||| || Sbjct 60231 ATACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCT 60290 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||||| ||| || | ||| ||||| || || || | |||||||||||| || Sbjct 60291 GAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGT 60350 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||| |||| | |||| |||||||| || | ||| Sbjct 60351 GGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCA 60410 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| |||||||| || |||| ||||||| ||| || ||||| Sbjct 60411 ACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 60460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899635990821840