Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1466 154 2e-32 seq1258 154 2e-32 seq1155 154 2e-32 seq630 152 8e-32 seq1253 131 2e-25 seq1531 111 2e-19 seq1530 111 2e-19 >seq1466 Length=125466 Score = 154 bits (170), Expect = 2e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||||| |||||||| ||||||||||||||||| | ||||| || ||| Sbjct 71451 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 71510 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| |||||| ||||| |||||||| || || ||||| ||| Sbjct 71511 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 71570 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||| | || || ||||| || |||||| ||||| | |||||||||||| Sbjct 71571 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAAT 71630 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGA 156038 | || ||| || | || |||||||| || ||||| Sbjct 71631 GT-TCAAAAGGAATCAACACTTCATTTGGTACTAAGA 71666 >seq1258 Length=100613 Score = 154 bits (170), Expect = 2e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||||| |||||||| ||||||||||||||||| | ||||| || ||| Sbjct 40210 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 40269 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| |||||| ||||| |||||||| || || ||||| ||| Sbjct 40270 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 40329 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||| | || || ||||| || |||||| ||||| | |||||||||||| Sbjct 40330 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAAT 40389 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGA 156038 | || ||| || | || |||||||| || ||||| Sbjct 40390 GT-TCAAAAGGAATCAACACTTCATTTGGTACTAAGA 40425 >seq1155 Length=100669 Score = 154 bits (170), Expect = 2e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||||| |||||||| ||||||||||||||||| | ||||| || ||| Sbjct 60460 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 60401 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| |||||| ||||| |||||||| || || ||||| ||| Sbjct 60400 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 60341 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||| | || || ||||| || |||||| ||||| | |||||||||||| Sbjct 60340 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAAT 60281 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGA 156038 | || ||| || | || |||||||| || ||||| Sbjct 60280 GT-TCAAAAGGAATCAACACTTCATTTGGTACTAAGA 60245 >seq630 Length=36350 Score = 152 bits (168), Expect = 8e-32 Identities = 171/226 (76%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || |||||||||||| | |||||||||||||||||| | ||||| || ||| Sbjct 225 AATGCAGATTTTTATTAAAACACTAACTGGAAAAACTATTACACTTGAAGTGGATCCTTC 166 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | |||| ||| || ||| ||| || ||||| || ||||| ||||||||||| || Sbjct 165 TGACACTATTGAAAATGTAAAATCTAAGATCCAAGACAAGGAAGGTATACCTCCAGATCA 106 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||||||||| ||| || || || | |||||| ||||| | || || || || Sbjct 105 ACAAAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTTTCGGACTACAA 46 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGG 156046 | | || ||| || | || || ||| | || | |||||||||| Sbjct 45 TGT-TCAAAAGGAATCCACCCTCCATCTTGTTCTTCGATTAAGAGG 1 >seq1253 Length=11614 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 155847 ACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAAT 155906 |||||||||||||||||| | ||||| || |||||| | |||| |||||| ||| | Sbjct 11614 ACTGGAAAAACTATTACACTTGAAGTGGATCCTTCTGACACTATTGAAAACGTAAAATCT 11555 Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 || || ||||| || ||||| ||||||||||| |||||||||||||||| ||| || || Sbjct 11554 AAGATCCAAGACAAGGAAGGTATACCTCCAGATCAACAAAGATTGATTTTTGCTGGAAAA 11495 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCA 156025 || | |||||| ||||| | || || || ||| | || ||| || | || || || Sbjct 11494 CAATTGGAAGATGGAAGAACCCTTTCGGACTACAATGT-TCAAAAGGAATCCACCCTCCA 11436 Query 156026 TTTAGTGTTAAGATTAAGAGGCGG 156049 | | || | |||||||||| || Sbjct 11435 TCTTGTTCTTCGATTAAGAGGTGG 11412 >seq1531 Length=18023 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481 ||||| ||||| || || ||||| || ||||||||||||||| || |||| ||||| Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCT 18541 || ||||| | |||||| |||||||||| || |||| | || | ||| | ||| Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAACATTCA 8725 Query 18542 ACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATG 18601 |||| || |||||||| ||||| ||| || || || |||||||| | || || Sbjct 8726 ACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATATA 8785 Query 18602 AAATGTTTTTCATT 18615 |||||| | ||||| Sbjct 8786 AAATGTCTCTCATT 8799 >seq1530 Length=18023 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481 ||||| ||||| || || ||||| || ||||||||||||||| || |||| ||||| Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCT 18541 || ||||| | |||||| |||||||||| || |||| | || | ||| | ||| Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAACATTCA 8725 Query 18542 ACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATG 18601 |||| || |||||||| ||||| ||| || || || |||||||| | || || Sbjct 8726 ACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATATA 8785 Query 18602 AAATGTTTTTCATT 18615 |||||| | ||||| Sbjct 8786 AAATGTCTCTCATT 8799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731857024069200