Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1466 176 9e-39 seq1258 176 9e-39 seq1155 176 9e-39 seq630 152 1e-31 seq1253 111 3e-19 >seq1466 Length=125466 Score = 176 bits (194), Expect = 9e-39 Identities = 184/239 (77%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATA 192357 ||| ||| ||||| || | ||| | || ||| ||||| | || | || ||| || | | Sbjct 71688 GTTCAATGATACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGA-ACA 71630 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 |||||||| || | ||||| |||| || | ||| || ||||| || || | ||||||| Sbjct 71629 TTATAATCTGAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGT 71570 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 ||||| ||||| || |||||||| ||||| |||||| |||| ||||| ||||| ||| Sbjct 71569 TGATCTGGTGGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCA 71510 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || ||||| |||||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 71509 GATGGGTCAACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 71451 >seq1258 Length=100613 Score = 176 bits (194), Expect = 9e-39 Identities = 184/239 (77%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATA 192357 ||| ||| ||||| || | ||| | || ||| ||||| | || | || ||| || | | Sbjct 40447 GTTCAATGATACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGA-ACA 40389 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 |||||||| || | ||||| |||| || | ||| || ||||| || || | ||||||| Sbjct 40388 TTATAATCTGAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGT 40329 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 ||||| ||||| || |||||||| ||||| |||||| |||| ||||| ||||| ||| Sbjct 40328 TGATCTGGTGGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCA 40269 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || ||||| |||||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 40268 GATGGGTCAACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 40210 >seq1155 Length=100669 Score = 176 bits (194), Expect = 9e-39 Identities = 184/239 (77%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATA 192357 ||| ||| ||||| || | ||| | || ||| ||||| | || | || ||| || | | Sbjct 60223 GTTCAATGATACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGA-ACA 60281 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 |||||||| || | ||||| |||| || | ||| || ||||| || || | ||||||| Sbjct 60282 TTATAATCTGAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGT 60341 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 ||||| ||||| || |||||||| ||||| |||||| |||| ||||| ||||| ||| Sbjct 60342 TGATCTGGTGGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCA 60401 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || ||||| |||||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 60402 GATGGGTCAACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 60460 >seq630 Length=36350 Score = 152 bits (168), Expect = 1e-31 Identities = 149/191 (78%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || | ||| || || || | |||| | |||| ||||||||||| |||||||| | Sbjct 36 CTTTTGA-ACATTGTAGTCCGAAAGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAA 94 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | ||||| |||||||| || ||||| ||||| || ||||| || ||| ||||||||| Sbjct 95 TCAATCTTTGTTGATCTGGAGGTATACCTTCCTTGTCTTGGATCTTAGATTTTACATTTT 154 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 |||| || || | || ||||| || ||||| ||||| ||||||| ||||||||||| Sbjct 155 CAATAGTGTCAGAAGGATCCACTTCAAGTGTAATAGTTTTTCCAGTTAGTGTTTTAATAA 214 Query 192527 ATATCTGCATT 192537 | ||||||||| Sbjct 215 AAATCTGCATT 225 >seq1253 Length=11614 Score = 111 bits (122), Expect = 3e-19 Identities = 125/166 (75%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || | ||| || || || | |||| | |||| ||||||||||| |||||||| | Sbjct 11450 CTTTTGA-ACATTGTAGTCCGAAAGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAA 11508 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | ||||| |||||||| || ||||| ||||| || ||||| || ||| |||||| || Sbjct 11509 TCAATCTTTGTTGATCTGGAGGTATACCTTCCTTGTCTTGGATCTTAGATTTTACGTTTT 11568 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 |||| || || | || ||||| || ||||| ||||| ||||| Sbjct 11569 CAATAGTGTCAGAAGGATCCACTTCAAGTGTAATAGTTTTTCCAGT 11614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984459351454950