Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1466 163 5e-35 seq1258 163 5e-35 seq1155 163 5e-35 seq630 143 5e-29 seq1253 109 1e-18 >seq1466 Length=125466 Score = 163 bits (180), Expect = 5e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||| || | ||||| || ||| ||||| | || | || || || ||||||| Sbjct 71683 ATGATACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAA 71624 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 ||||| | | || | || || | ||| || ||||| || || | ||||||||| || Sbjct 71623 TCTGAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCT 71564 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||| ||||| |||||| |||| ||||| ||||||||| || | Sbjct 71563 GGTGGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGG 71504 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| |||||||| ||||| |||||||||||||| || || |||||||| Sbjct 71503 TCAACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 71451 >seq1258 Length=100613 Score = 163 bits (180), Expect = 5e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||| || | ||||| || ||| ||||| | || | || || || ||||||| Sbjct 40442 ATGATACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAA 40383 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 ||||| | | || | || || | ||| || ||||| || || | ||||||||| || Sbjct 40382 TCTGAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCT 40323 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||| ||||| |||||| |||| ||||| ||||||||| || | Sbjct 40322 GGTGGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGG 40263 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| |||||||| ||||| |||||||||||||| || || |||||||| Sbjct 40262 TCAACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 40210 >seq1155 Length=100669 Score = 163 bits (180), Expect = 5e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||| || | ||||| || ||| ||||| | || | || || || ||||||| Sbjct 60228 ATGATACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAA 60287 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 ||||| | | || | || || | ||| || ||||| || || | ||||||||| || Sbjct 60288 TCTGAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCT 60347 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||| ||||| |||||| |||| ||||| ||||||||| || | Sbjct 60348 GGTGGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGG 60407 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| |||||||| ||||| |||||||||||||| || || |||||||| Sbjct 60408 TCAACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 60460 >seq630 Length=36350 Score = 143 bits (158), Expect = 5e-29 Identities = 142/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 || ||| || || || | | || | | || ||||||||||| ||||||||||| ||||| Sbjct 42 AACATTGTAGTCCGAAAGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCT 101 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| || || ||||| ||||| || ||||| || ||| ||||||||| ||||| Sbjct 102 TTGTTGATCTGGAGGTATACCTTCCTTGTCTTGGATCTTAGATTTTACATTTTCAATAGT 161 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || | || ||||| || ||||| ||||| ||||||| ||||||||| || ||||| Sbjct 162 GTCAGAAGGATCCACTTCAAGTGTAATAGTTTTTCCAGTTAGTGTTTTAATAAAAATCTG 221 Query 172067 CATT 172070 |||| Sbjct 222 CATT 225 >seq1253 Length=11614 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||| | ||| | || | ||| | || | || || || ||| || || || Sbjct 11412 CCACCTCTTAATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAA 11471 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | | || ||||||||||| ||||||||||| ||||| ||||| || || ||| Sbjct 11472 AGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGT 11531 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || ||||| || ||| |||||| || ||||| || || | || ||| Sbjct 11532 ATACCTTCCTTGTCTTGGATCTTAGATTTTACGTTTTCAATAGTGTCAGAAGGATCCACT 11591 Query 172023 TCTAGAGTAATGGTTTTACCAGT 172045 || || ||||| ||||| ||||| Sbjct 11592 TCAAGTGTAATAGTTTTTCCAGT 11614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905117478654600