Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq62 217 4e-51 seq321 100 8e-16 seq1466 84.2 6e-11 >seq62 Length=56742 Score = 217 bits (240), Expect = 4e-51 Identities = 537/812 (66%), Gaps = 7/812 (1%) Strand=Plus/Minus Query 155693 TTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTC 155752 |||||| ||||||||||| ||||| || || || || || || || || || || || Sbjct 51094 TTTACTATTACAAGCATCTTTGTAAAGCATATAAGGTTGACCAGTTTCAATTTGAGCTTC 51035 Query 155753 CAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTC 155812 || || | ||| || | | || | |||||| ||||||| ||||| || Sbjct 51034 TAGTATGAAAAACCATAGTTTTTGAGCTTCAATTTGACGTTTGTATCGCCCTTCTTTTTC 50975 Query 155813 ATATTTCATATACAGCGTTCGGTAATCCT--CACCGTAACAATCACTCAGTCCAGGGCAC 155870 ||| || || ||||| ||| || | | ||||||||||||| ||||||||||| Sbjct 50974 ATACTTTATGTACAG--TTCTTCAAACTTTTCACCGTAACAATCCGAAAGTCCAGGGCAT 50917 Query 155871 TTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCA 155930 | || ||||| | || ||||| ||| ||||| ||| || | |||||| | ||| Sbjct 50916 TCATGAGGGCACATAAGTGACCAGATTCCATTACTTTCTACTCGTTTCATAAACAAATCT 50857 Query 155931 CTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTC 155990 ||| | ||||||||||| ||||| || |||||| || ||| || Sbjct 50856 GGTATCCATAAGGCATAGAAAAGATCCCTAGCACGAATATCCTCACTACCAGTATTTTTT 50797 Query 155991 CGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTA 156050 || || ||||| ||||| | ||||| | ||| |||||| | ||| || ||||| Sbjct 50796 CGAAGATCTAAAAATTCTACTATATCGGCATGCCATGGCTCTAAATATATGGCAAATGAG 50737 Query 156051 CCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGC 156107 || | |||| ||||| || || || || |||| | || ||| | || | || Sbjct 50736 CCTGGACGCTTGTTTCCACCTTGGTCAACGTAACGAGAACAATTGTTGTAAACTCGTAAA 50677 Query 156108 ATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGA 156167 | |||| ||| ||||| ||| | ||||| ||||| ||||| | |||| | | ||| Sbjct 50676 AGTGGAACAATTCCATTAGAATTACCATTCGTTCCTGCAATATATGTACCACAAGCTCGA 50617 Query 156168 ACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTT 156227 | |||||||||||||||||| | ||||| | |||| || || ||| || | || Sbjct 50616 ATATTATGAATATGTAGTCCCACTCCACCGGCAAATTTGGAGATCATAGCACAGTTTTTA 50557 Query 156228 ACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTT 156287 | |||| || |||||||| || ||| |||| ||||| | | | | || | Sbjct 50556 AGTGTATCAAATATACCTTCTATGCTATCGTCTTTCATTGCCAACAAAAAACAACTAGAC 50497 Query 156288 AATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTA 156347 | |||||| || ||||||||||| ||||||| || || ||||||||| |||| | Sbjct 50496 ATTTGAGGACGAGGTGTTCCAGCATTGAATAAGGTTGGAGTTGCATGAGTAAACCAACGT 50437 Query 156348 TTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATA 156407 | |||||||| | ||||| || | |||| || | || |||| | | Sbjct 50436 TCTGACATATAGTTATATGTTTCTATTGCAGATTCAATATCATCAAAATGTATACCAACA 50377 Query 156408 GAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGG 156467 | || |||||| ||||||| ||||| | || ||||| |||||| || || || Sbjct 50376 GCAACTCTCATCAACATATGTTGAGGTCTTTCCACAATTTTTCCATCTATCTTCATTAGA 50317 Query 156468 TATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || | | ||| || |||||||| || ||||| Sbjct 50316 TAAGATCTTTCAAGGGTTTTAAAACCAAAATA 50285 >seq321 Length=19914 Score = 100 bits (110), Expect = 8e-16 Identities = 121/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 233283 CAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTTGACCTACCCT 233342 |||| | ||||||||||||||||||||||| ||| |||||||| ||| || | ||| | Sbjct 2702 CAATTAAACAATCACGTTCCATTTCACCAAGACGAAGACCACCTTCACGAGAACGACCTT 2761 Query 233343 GGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTAATTTTATCTT 233402 || ||| | |||| ||| | || |||||| |||| | | || || |||||| Sbjct 2762 CAGTTGGTTGTCTTGTTAGAACTGCTCGTGGACCTCGAGCTCTAGCATGCATCTTATCTA 2821 Query 233403 TAACCATATGCTTCAGTCTCATATAATA-ACACGGACCAATA 233443 |||||||||||| ||| | |||||| ||| ||||||||| Sbjct 2822 CAACCATATGCTTAAGTTTTTGATAATACACA-GGACCAATA 2862 >seq1466 Length=125466 Score = 84.2 bits (92), Expect = 6e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| || | | |||||| ||||| ||||||||| || ||||| ||||| || Sbjct 6971 TTCCATAGCTTTCACAAGACGACGTTGAATGTAACCAGTTTCGGAGGTTTTAACAGCAGT 6912 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 |||||||| ||| | | |||||||||||||| ||||| | |||| Sbjct 6911 ATCAATTACACCTTCTCTCCCACCCATAGCATGAAAGAAAAACTCT 6866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471786730005669