Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1466 168 1e-36 seq1258 168 1e-36 seq1155 168 1e-36 seq630 145 1e-29 seq1253 123 4e-23 >seq1466 Length=125466 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||||||||||||| |||||||| |||||| |||| || || | | Sbjct 71452 TGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCTG 71511 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||| |||| |||||| ||| |||||||| |||||||| ||||||| Sbjct 71512 ATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAAC 71571 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || || || || || ||| | || ||| |||||| | ||||||||||| Sbjct 71572 AGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAATG 71631 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| || | ||||| ||| || || | | ||||||| Sbjct 71632 TTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGTA 71679 >seq1258 Length=100613 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||||||||||||| |||||||| |||||| |||| || || | | Sbjct 40211 TGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCTG 40270 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||| |||| |||||| ||| |||||||| |||||||| ||||||| Sbjct 40271 ATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAAC 40330 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || || || || || ||| | || ||| |||||| | ||||||||||| Sbjct 40331 AGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAATG 40390 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| || | ||||| ||| || || | | ||||||| Sbjct 40391 TTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGTA 40438 >seq1155 Length=100669 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||||||||||||| |||||||| |||||| |||| || || | | Sbjct 60459 TGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCTG 60400 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||| |||| |||||| ||| |||||||| |||||||| ||||||| Sbjct 60399 ATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAAC 60340 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || || || || || ||| | || ||| |||||| | ||||||||||| Sbjct 60339 AGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAATG 60280 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| || | ||||| ||| || || | | ||||||| Sbjct 60279 TTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGTA 60232 >seq630 Length=36350 Score = 145 bits (160), Expect = 1e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || || |||||| |||| |||||||| ||||| |||| || || | | | Sbjct 223 TGCAGATTTTTATTAAAACACTAACTGGAAAAACTATTACACTTGAAGTGGATCCTTCTG 164 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||||||| ||| || ||| || ||||| || || || ||||||| Sbjct 163 ACACTATTGAAAATGTAAAATCTAAGATCCAAGACAAGGAAGGTATACCTCCAGATCAAC 104 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || |||||||| || ||| ||||| | | || || ||| Sbjct 103 AAAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTTTCGGACTACAATG 44 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGG 146254 | ||||| ||||| || ||||| | || | ||||||||||| Sbjct 43 TTCAAAAGGAATCCACCCTCCATCTTGTTCTTCGATTAAGAGG 1 >seq1253 Length=11614 Score = 123 bits (136), Expect = 4e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146055 ACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAAT 146114 || |||||||| ||||| |||| || || | | || |||||| |||| |||||| | Sbjct 11614 ACTGGAAAAACTATTACACTTGAAGTGGATCCTTCTGACACTATTGAAAACGTAAAATCT 11555 Query 146115 AAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAA 146174 || || ||| || ||||| || || || |||||||||||| | |||||||| || ||| Sbjct 11554 AAGATCCAAGACAAGGAAGGTATACCTCCAGATCAACAAAGATTGATTTTTGCTGGAAAA 11495 Query 146175 CAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCAT 146234 ||||| || ||| ||||| | | || || ||| | ||||| ||||| || ||||| Sbjct 11494 CAATTGGAAGATGGAAGAACCCTTTCGGACTACAATGTTCAAAAGGAATCCACCCTCCAT 11435 Query 146235 TTAGTATTACGATTAAGAGGAGG 146257 | || | ||||||||||| || Sbjct 11434 CTTGTTCTTCGATTAAGAGGTGG 11412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786150313070040