Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1466 185 7e-42 seq1258 185 7e-42 seq1155 185 7e-42 seq630 167 2e-36 seq1253 136 3e-27 >seq1466 Length=125466 Score = 185 bits (204), Expect = 7e-42 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||||||||| || ||||| ||||||| |||||||| | || || | | ||| Sbjct 71662 AGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACCATCT 71603 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || ||||| || ||||| |||||| ||| || ||||| || |||||||| ||||||||| Sbjct 71602 TCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCT 71543 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| ||||||| |||||| ||| ||||| | || ||||||||||| |||||| Sbjct 71542 TGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGTT 71483 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACGTATGCGTTT 29804 || |||||||| ||||| | ||| |||||||| | || | || | || || Sbjct 71482 TTTCCAGTTAATGTTTTTATAAAAATCTGCATCTAAACAAGTTTTCGATT 71433 >seq1258 Length=100613 Score = 185 bits (204), Expect = 7e-42 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||||||||| || ||||| ||||||| |||||||| | || || | | ||| Sbjct 40421 AGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACCATCT 40362 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || ||||| || ||||| |||||| ||| || ||||| || |||||||| ||||||||| Sbjct 40361 TCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCT 40302 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| ||||||| |||||| ||| ||||| | || ||||||||||| |||||| Sbjct 40301 TGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGTT 40242 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACGTATGCGTTT 29804 || |||||||| ||||| | ||| |||||||| | || | || | || || Sbjct 40241 TTTCCAGTTAATGTTTTTATAAAAATCTGCATCTAAACAAGTTTTCGATT 40192 >seq1155 Length=100669 Score = 185 bits (204), Expect = 7e-42 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||||||||| || ||||| ||||||| |||||||| | || || | | ||| Sbjct 60249 AGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACCATCT 60308 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || ||||| || ||||| |||||| ||| || ||||| || |||||||| ||||||||| Sbjct 60309 TCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCT 60368 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| ||||||| |||||| ||| ||||| | || ||||||||||| |||||| Sbjct 60369 TGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGTT 60428 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACGTATGCGTTT 29804 || |||||||| ||||| | ||| |||||||| | || | || | || || Sbjct 60429 TTTCCAGTTAATGTTTTTATAAAAATCTGCATCTAAACAAGTTTTCGATT 60478 >seq630 Length=36350 Score = 167 bits (184), Expect = 2e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 29563 CCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATG 29622 || || || || || || | ||| || |||||||| ||||||| || || |||| || | Sbjct 1 CCTCTTAATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGG 60 Query 29623 GTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATA 29682 || | ||| || | |||||| |||||| | ||||||||||| ||||| || || ||| Sbjct 61 GTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTATA 120 Query 29683 CCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCA 29742 || || |||||||| | || ||| ||| |||| | |||||||||| | || |||||| Sbjct 121 CCTTCCTTGTCTTGGATCTTAGATTTTACATTTTCAATAGTGTCAGAAGGATCCACTTCA 180 Query 29743 AGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || |||||||| ||||||| ||||||| ||| ||||||||| Sbjct 181 AGTGTAATAGTTTTTCCAGTTAGTGTTTTAATAAAAATCTGCATT 225 >seq1253 Length=11614 Score = 136 bits (150), Expect = 3e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || || || || || | ||| || |||||||| ||||||| || || |||| | Sbjct 11412 CCACCTCTTAATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAA 11471 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | |||||| |||||| | ||||||||||| ||||| || || Sbjct 11472 AGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGT 11531 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || |||||||| | || ||| || |||| | |||||||||| | || ||| Sbjct 11532 ATACCTTCCTTGTCTTGGATCTTAGATTTTACGTTTTCAATAGTGTCAGAAGGATCCACT 11591 Query 29740 TCAAGAGTTATAGTTTTGCCAGT 29762 ||||| || |||||||| ||||| Sbjct 11592 TCAAGTGTAATAGTTTTTCCAGT 11614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385211514515817