Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1620 100 4e-16 seq723 100 4e-16 seq1466 98.7 1e-15 >seq1620 Length=46792 Score = 100 bits (110), Expect = 4e-16 Identities = 143/197 (73%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 193415 AGTTAAAGTTGTTATTGGTCAGTTACGTATACCTGAAATAGGGGATAAATTTT---GTTC 193471 |||||||||| | ||||||| | || ||| |||| || ||||||||| || Sbjct 25135 AGTTAAAGTTCGT-----TCAGTTA-GAATTCCTCAAATTGGTGATAAATTTGCAAGT-- 25084 Query 193472 AGGAATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTAC 193531 || |||| | ||||||| || |||||||| | ||| |||||||||||||| ||||| Sbjct 25083 AGACATGGTC-AAAAAGGTACATGTGGTATAACATATCGTCAAGAAGATATGCCGTTTAC 25025 Query 193532 AGCTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTCCATCCAGAATGAC 193591 ||| || || || || ||||||||||| ||||| || ||||||| | ||||| Sbjct 25024 TGCTGATGGAATAGTTCCCGATATTATTATCAATCCTCATGCTATTCCAAGTCGTATGAC 24965 Query 193592 CATTAATCAAATTATTG 193608 |||| ||| |||||| Sbjct 24964 CATTGGTCATCTTATTG 24948 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 193019 TGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAGACAGTAT 193078 ||||||||||||| | |||||||| || | ||||| || ||||||||||| || ||| Sbjct 25597 TGGTATTAATGCTGTAGTTGCTATTGCAAGTTATACCGGGTATAATCAAGAGGATTCTAT 25538 Query 193079 TATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGTACTATAACTTATAATACATA 193138 ||| ||||| || || |||| || | || |||| | ||||| ||||| ||||| Sbjct 25537 CATTATAAATCAATCTGCTATAGATCGTGGTCTATTCCGATCTATATTTTATAGAACATA 25478 Query 193139 TACAGTTGAAGAA-ACAA 193155 | | ||||||| |||| Sbjct 25477 CATGGATGAAGAAGACAA 25460 >seq723 Length=46792 Score = 100 bits (110), Expect = 4e-16 Identities = 143/197 (73%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 193415 AGTTAAAGTTGTTATTGGTCAGTTACGTATACCTGAAATAGGGGATAAATTTT---GTTC 193471 |||||||||| | ||||||| | || ||| |||| || ||||||||| || Sbjct 21658 AGTTAAAGTTCGT-----TCAGTTA-GAATTCCTCAAATTGGTGATAAATTTGCAAGT-- 21709 Query 193472 AGGAATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTAC 193531 || |||| | ||||||| || |||||||| | ||| |||||||||||||| ||||| Sbjct 21710 AGACATGGTC-AAAAAGGTACATGTGGTATAACATATCGTCAAGAAGATATGCCGTTTAC 21768 Query 193532 AGCTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTCCATCCAGAATGAC 193591 ||| || || || || ||||||||||| ||||| || ||||||| | ||||| Sbjct 21769 TGCTGATGGAATAGTTCCCGATATTATTATCAATCCTCATGCTATTCCAAGTCGTATGAC 21828 Query 193592 CATTAATCAAATTATTG 193608 |||| ||| |||||| Sbjct 21829 CATTGGTCATCTTATTG 21845 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 193019 TGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAGACAGTAT 193078 ||||||||||||| | |||||||| || | ||||| || ||||||||||| || ||| Sbjct 21196 TGGTATTAATGCTGTAGTTGCTATTGCAAGTTATACCGGGTATAATCAAGAGGATTCTAT 21255 Query 193079 TATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGTACTATAACTTATAATACATA 193138 ||| ||||| || || |||| || | || |||| | ||||| ||||| ||||| Sbjct 21256 CATTATAAATCAATCTGCTATAGATCGTGGTCTATTCCGATCTATATTTTATAGAACATA 21315 Query 193139 TACAGTTGAAGAA-ACAA 193155 | | ||||||| |||| Sbjct 21316 CATGGATGAAGAAGACAA 21333 >seq1466 Length=125466 Score = 98.7 bits (108), Expect = 1e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| | | |||| ||||||||||||| |||||||| |||||||||||| | ||| Sbjct 5814 AATTTGAGTGTTACTACGCCATATAATGCTGACTTTGATGGTGATGAAATGAATATGCAT 5873 Query 52029 GTTCCTCAATCATATGGAGCTACTGCTGAATTACAAGAATTA 52070 || ||||| || | | ||||| |||||||||||||||||| Sbjct 5874 GTACCTCAGTCGTTAGAAGCTAAAGCTGAATTACAAGAATTA 5915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635164602678360