Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1466 96.9 4e-15 seq1620 91.5 2e-13 seq723 91.5 2e-13 >seq1466 Length=125466 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 50497 ||||||||||||| |||||||| |||||||||||| | ||||| ||||| || | | || Sbjct 5833 CATATAATGCTGACTTTGATGGTGATGAAATGAATATGCATGTACCTCAGTCGTTAGAAG 5892 Query 50498 CTACTGCTGAATTACAAGAATTA 50520 ||| |||||||||||||||||| Sbjct 5893 CTAAAGCTGAATTACAAGAATTA 5915 >seq1620 Length=46792 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 192968 AGTTAAAGTTGTTATTGGTCAGTTACGTATACCTGAAATAGGGGATAAATTTTGTTCGGG 193027 |||||||||| | ||||||| | || ||| |||| || ||||||||| | Sbjct 25135 AGTTAAAGTTCGT-----TCAGTTA-GAATTCCTCAAATTGGTGATAAATTTGCAAGTAG 25082 Query 193028 A-ATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAA 193086 | |||| | ||||||| || |||||||| | ||| |||||||||||||| ||||| Sbjct 25081 ACATGGTC-AAAAAGGTACATGTGGTATAACATATCGTCAAGAAGATATGCCGTTTACTG 25023 Query 193087 CTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTCC--GTCCAGAATGAC 193144 || || || || || ||||||||||| ||||| || |||||| ||| | ||||| Sbjct 25022 CTGATGGAATAGTTCCCGATATTATTATCAATCCTCATGCTATTCCAAGTC--GTATGAC 24965 Query 193145 CATTAATCAAATTATTG 193161 |||| ||| |||||| Sbjct 24964 CATTGGTCATCTTATTG 24948 Score = 82.4 bits (90), Expect = 1e-10 Identities = 145/205 (71%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 192507 TATCCACAAAAACCACTTGTTACCACA-GAT-ATTGCAAAATTTAATAAATTAGACGATT 192564 ||| ||||||||||||| ||| | ||| ||| | || || | ||| | | | ||| Sbjct 25662 TATTCACAAAAACCACTAGTTTCTACAAGATCAATGGAATTTCTAAGAT-TCCGTGAATT 25604 Query 192565 ATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAACCAAGAAG 192624 | || ||||||||||||| | |||||||| || | ||||| || ||||| ||||| | Sbjct 25603 A-CCTGCTGGTATTAATGCTGTAGTTGCTATTGCAAGTTATACCGGGTATAATCAAGAGG 25545 Query 192625 ACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGCACTATAACTTATA 192684 | ||| ||| ||||| || || |||| || | || |||| | ||||| ||||| Sbjct 25544 ATTCTATCATTATAAATCAATCTGCTATAGATCGTGGTCTATTCCGATCTATATTTTATA 25485 Query 192685 ATACATATACAGTTGAAGAA-ACAA 192708 ||||| | | ||||||| |||| Sbjct 25484 GAACATACATGGATGAAGAAGACAA 25460 >seq723 Length=46792 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 192968 AGTTAAAGTTGTTATTGGTCAGTTACGTATACCTGAAATAGGGGATAAATTTTGTTCGGG 193027 |||||||||| | ||||||| | || ||| |||| || ||||||||| | Sbjct 21658 AGTTAAAGTTCGT-----TCAGTTA-GAATTCCTCAAATTGGTGATAAATTTGCAAGTAG 21711 Query 193028 A-ATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAA 193086 | |||| | ||||||| || |||||||| | ||| |||||||||||||| ||||| Sbjct 21712 ACATGGTC-AAAAAGGTACATGTGGTATAACATATCGTCAAGAAGATATGCCGTTTACTG 21770 Query 193087 CTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTCC--GTCCAGAATGAC 193144 || || || || || ||||||||||| ||||| || |||||| ||| | ||||| Sbjct 21771 CTGATGGAATAGTTCCCGATATTATTATCAATCCTCATGCTATTCCAAGTC--GTATGAC 21828 Query 193145 CATTAATCAAATTATTG 193161 |||| ||| |||||| Sbjct 21829 CATTGGTCATCTTATTG 21845 Score = 82.4 bits (90), Expect = 1e-10 Identities = 145/205 (71%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 192507 TATCCACAAAAACCACTTGTTACCACA-GAT-ATTGCAAAATTTAATAAATTAGACGATT 192564 ||| ||||||||||||| ||| | ||| ||| | || || | ||| | | | ||| Sbjct 21131 TATTCACAAAAACCACTAGTTTCTACAAGATCAATGGAATTTCTAAGAT-TCCGTGAATT 21189 Query 192565 ATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAACCAAGAAG 192624 | || ||||||||||||| | |||||||| || | ||||| || ||||| ||||| | Sbjct 21190 A-CCTGCTGGTATTAATGCTGTAGTTGCTATTGCAAGTTATACCGGGTATAATCAAGAGG 21248 Query 192625 ACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGCACTATAACTTATA 192684 | ||| ||| ||||| || || |||| || | || |||| | ||||| ||||| Sbjct 21249 ATTCTATCATTATAAATCAATCTGCTATAGATCGTGGTCTATTCCGATCTATATTTTATA 21308 Query 192685 ATACATATACAGTTGAAGAA-ACAA 192708 ||||| | | ||||||| |||| Sbjct 21309 GAACATACATGGATGAAGAAGACAA 21333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628518338680320