Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq630 172 1e-37 seq1466 163 6e-35 seq1258 163 6e-35 seq1155 163 6e-35 seq1253 154 3e-32 seq724 95.1 2e-14 >seq630 Length=36350 Score = 172 bits (190), Expect = 1e-37 Identities = 173/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 82587 CCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGA 82646 ||||| || || ||||| | || || || ||||| || || | ||| || || || || Sbjct 1 CCTCTTAATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGG 60 Query 82647 ATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATT 82706 |||| || ||||| | ||||||||||||||| || | ||||||||||||||||||||| Sbjct 61 GTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTATA 120 Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||| ||||| ||||| | ||||||||||||||| || ||| ||| || ||||| Sbjct 121 CCTTCCTTGTCTTGGATCTTAGATTTTACATTTTCAATAGTGTCAGAAGGATCCACTTCA 180 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || || || || || | || || | ||| ||||||||| Sbjct 181 AGTGTAATAGTTTTTCCAGTTAGTGTTTTAATAAAAATCTGCATT 225 >seq1466 Length=125466 Score = 163 bits (180), Expect = 6e-35 Identities = 180/236 (76%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || || || || || ||||| || || | ||||||||| || || ||||||| ||| Sbjct 71662 AGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACCATCT 71603 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| |||||||| || || ||||| ||||||||||| || || ||||| || ||| Sbjct 71602 TCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCT 71543 Query 82719 TGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 ||||| ||| ||||| |||||||| || |||||| || || ||||| | ||| || || Sbjct 71542 TGAAT-TTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGT 71484 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT-TATTATATTTTTCTACTAAACA 82832 || || || || || |||| ||| |||||||| || | ||||| | |||||| Sbjct 71483 TTTTCCAGTTAATGTTTTTATAAAAATCTGCATCTAAACAAGTTTTCGATTAAACA 71428 >seq1258 Length=100613 Score = 163 bits (180), Expect = 6e-35 Identities = 180/236 (76%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || || || || || ||||| || || | ||||||||| || || ||||||| ||| Sbjct 40421 AGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACCATCT 40362 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| |||||||| || || ||||| ||||||||||| || || ||||| || ||| Sbjct 40361 TCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCT 40302 Query 82719 TGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 ||||| ||| ||||| |||||||| || |||||| || || ||||| | ||| || || Sbjct 40301 TGAAT-TTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGT 40243 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT-TATTATATTTTTCTACTAAACA 82832 || || || || || |||| ||| |||||||| || | ||||| | |||||| Sbjct 40242 TTTTCCAGTTAATGTTTTTATAAAAATCTGCATCTAAACAAGTTTTCGATTAAACA 40187 >seq1155 Length=100669 Score = 163 bits (180), Expect = 6e-35 Identities = 180/236 (76%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || || || || || ||||| || || | ||||||||| || || ||||||| ||| Sbjct 60249 AGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACCATCT 60308 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| |||||||| || || ||||| ||||||||||| || || ||||| || ||| Sbjct 60309 TCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCT 60368 Query 82719 TGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 ||||| ||| ||||| |||||||| || |||||| || || ||||| | ||| || || Sbjct 60369 TGAAT-TTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGT 60427 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT-TATTATATTTTTCTACTAAACA 82832 || || || || || |||| ||| |||||||| || | ||||| | |||||| Sbjct 60428 TTTTCCAGTTAATGTTTTTATAAAAATCTGCATCTAAACAAGTTTTCGATTAAACA 60483 >seq1253 Length=11614 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| || || ||||| | || || || ||||| || || | ||| || || || Sbjct 11412 CCACCTCTTAATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAA 11471 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||| || ||||| | ||||||||||||||| || | ||||||||||||||||||| Sbjct 11472 AGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGT 11531 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| | |||||| |||||||| || ||| ||| || ||| Sbjct 11532 ATACCTTCCTTGTCTTGGATCTTAGATTTTACGTTTTCAATAGTGTCAGAAGGATCCACT 11591 Query 82764 TCCAAAGTTATCGTCTTGCCTGT 82786 || | || || || || || || Sbjct 11592 TCAAGTGTAATAGTTTTTCCAGT 11614 >seq724 Length=87760 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 198514 TAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATAT 198573 |||||||| | ||||| ||| | ||| |||||||| || | ||||||||||| || || | Sbjct 25501 TAGGTTGTTTATGGTCAATTGGTGGAGTACATGATAGACCTTGGAAAGAAAGGCCAATTT 25560 Query 198574 TTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGT 198625 ||||| || ||||||||||||| || |||| | | |||||||||||| Sbjct 25561 TTGGGCTTATTAGATATATGAATTTAGACGGTTGCTATAGAAAATTTGATGT 25612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981806607094943