Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq62 280 3e-70 seq1466 120 7e-22 seq1435 105 2e-17 seq1434 105 2e-17 seq76 95.1 3e-14 seq1633 87.8 4e-12 seq1186 87.8 4e-12 >seq62 Length=56742 Score = 280 bits (310), Expect = 3e-70 Identities = 600/891 (67%), Gaps = 13/891 (1%) Strand=Plus/Plus Query 110273 TATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGC 110332 ||| | |||| | | ||||||||| | |||||||||||| ||||| |||||| | | Sbjct 50254 TATAGTTTATCATAGAGACTATGATTATTCCTATTTTGGTTTTAAAACCCTTGAAAGATC 50313 Query 110333 TTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGT 110392 |||| || | | |||| | || | ||| | |||||||| ||||| | | || Sbjct 50314 TTATCTAATGAAGATAGATGGAAAAATTGTGGAAAGACCTCAACATATGTTGATGAGAGT 50373 Query 110393 TGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAG 110452 ||| ||||||| ||| |||||||| || ||| || ||| ||| | || || | Sbjct 50374 TGCTGTTGGTATACATTTTGATGATATTGAATCTGCAATAGAAACATAT-AACTA-TATG 50431 Query 110453 TAAAAAGAAAG--CTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGA 110510 | | || | || |||||| ||||| ||| |||| || || ||||| | | Sbjct 50432 TCAGAACGTTGGTTTACTCATGCAACTCCAACCTTATTCAATGCTGGAACACCTCGTCCT 50491 Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||| || || ||| ||| | | | ||| || || ||| || |||||||| | |||| Sbjct 50492 CAAATGTCTAGTTGTTTTTTGTTGGCAATGAAAGACGATAGCATAGAAGGTATATTTGAT 50551 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 | |||||| | |||| | || || ||| | || ||| | || | || ||||| Sbjct 50552 ACACTTAAAAACTGTGCTATGATCTCCAAATTTGCCGGTGGAGTGGGACTACATATTCAT 50611 Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTT 110690 ||||||| | || || |||| ||| | |||| ||| ||| | |||| ||||| Sbjct 50612 AATATTCGAGCTTGTGGTACATATATTGCAGGAACGAATGGTAATTCTAATGGAATTGTT 50671 Query 110691 CCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGA 110747 ||| | ||| |||| | |||| | | | || || | |||||||| ||| | Sbjct 50672 CCACTTTTACGAGTTTACAACAATTGTTCTCGTTACGTTGACCAAGGTGGAAACAAGCGT 50731 Query 110748 AATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAA 110807 ||||||||||| || ||| | || || |||||| | |||||| | ||||| ||||| Sbjct 50732 CCAGGCTCATTTGCCATATATTTAGAGCCATGGCATGCCGATATAGTAGAATTTTTAGAT 50791 Query 110808 CTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGG 110867 ||||| |||||| || ||| || | || | ||| | || ||||| | ||| Sbjct 50792 CTTCGAAAAAATACTGGTAGTGAGGATATTCGTGCTAGGGATCTTTTCTATGCCTTATGG 50851 Query 110868 ATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCT 110927 || ||||||| || |||||||| || || ||||| || ||||| |||||||| ||| Sbjct 50852 ATACCAGATTTGTTTATGAAACGAGTAGAAAGTAATGGAATCTGGTCACTTATGTGCCCT 50911 Query 110928 CATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAA 110987 ||| | ||||| || || ||| || || || |||||||||| || ||| ||| Sbjct 50912 CATGAATGCCCTGGACTTTCGGATTGTTACGGTGAAAAGTTTGAAGAACTGTACATAAAG 50971 Query 110988 TATGAAAAAGAAGGCAAGTTTCGCAAA---CAAATTCCAGCTCAAGAACTTTGGTTCAAA 111044 |||||||||||||| | |||| |||||| ||||||| |||| ||||| Sbjct 50972 TATGAAAAAGAAGG---GCGATACAAACGTCAAATTGAAGCTCAAAAACTATGGTTTTTC 51028 Query 111045 ATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAAT 111104 || || ||| | ||| |||||||||| |||||||| | || |||||| | |||| Sbjct 51029 ATACTAGAAGCTCAAATTGAAACTGGTCAACCTTATATGCTTTACAAAGATGCTTGTAAT 51088 Query 111105 CGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 | ||| ||||||| ||| | || ||||||||||| ||| ||||| Sbjct 51089 AGTAAAAGCAATCAAAAAAATCTTGGTGTTATTAAGTCTAGCAATCTGTGC 51139 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 113017 CACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAATGTTTCGAGCCAA 113076 |||| ||||||||||| || ||| |||| |||||||| ||||||||| ||| || || Sbjct 51669 CACCTATGCCTACAGCATCTACTTCACAAATTCTCGGCAATAATGAAGCTTTTGAACCTT 51728 Query 113077 TTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTT 113120 |||| || ||||||||| |||||||| || ||||||| ||| Sbjct 51729 TTACGAGCAATATTTATTCTAGACGTGTTTTATCAGGTGAATTT 51772 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 112578 GTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATT 112637 || ||||||||| | ||||| |||| ||| ||||||| | || |||||| ||| Sbjct 51275 GTTACAAAAGTTGCTGTTCGTAATTTAAACAAAGTTATTGATAGAAACTTCTATCCTATT 51334 Query 112638 CAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTA 112697 |||| | |||| || | ||||| |||||||| |||| |||||||||||| Sbjct 51335 ATTGAAGCCTATAATTCAAACATGCGTCATAGGCCAATTGGAGTTGGTGTACAAGGATTA 51394 Query 112698 GCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAAT 112757 ||||||| |||| | | | | || |||||||| ||| |||||| |||||| Sbjct 51395 GCTGATGCATTTGTATTATTAAGGATGCCTTTTGACAGTGAAGAAGCTAAAAAATTAAAT 51454 Query 112758 GAAAAGATTTTCGAAACAATCTAT 112781 | | || || |||||||| ||| Sbjct 51455 ATACAAATATTTGAAACAATTTAT 51478 >seq1466 Length=125466 Score = 120 bits (132), Expect = 7e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 305317 TGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGC 305376 |||| ||||| ||| | || ||| | ||||| || ||||| ||||| ||||||| Sbjct 5714 TGACGATGATATTGTTATATTTAATCGTCAACCTAGTCTTCATAAGATGTCAATGATGGG 5773 Query 305377 TCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCC 305436 ||| || ||||||||| | | | || ||||| | ||| | |||| | |||||| Sbjct 5774 CCATCGTGTAAAAGTATTACCATGGTCTACTTTTCGTCTTAATTTGAGTGTTACTACGCC 5833 Query 305437 TTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 |||||||| || |||||||| |||||||||||||||||||||||||| || Sbjct 5834 ATATAATGCTGACTTTGATGGTGATGAAATGAATATGCATGTACCTCAGTC 5884 Score = 114 bits (126), Expect = 3e-20 Identities = 137/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 304887 TACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGG--CATC 304944 |||| |||||| |||||||| | | |||||||||| | | |||| | || | || Sbjct 5290 TACAGTATCATGTTGCAACACTTTTTGATAATGAAAGTCC--GAATCTTCCAAGAGCAAT 5347 Query 304945 TCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCG 305004 || | ||| |||||||| |||||| || | ||||| |||||||||||||| ||| | Sbjct 5348 ACAGAAATCAGGCAGACCATTAAAGTCAATAAAACAACGTATTAAAGGTAAAGAAGGTAG 5407 Query 305005 TATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACC 305064 ||||| || ||||| ||||||||||| || |||||| |||| | | || ||||| || Sbjct 5408 AATTCGTGGAAATCTTATGGGAAAACGAGTAGATTTTTCTGCACGTACAGTCATCACGCC 5467 Query 305065 TGAT 305068 ||| Sbjct 5468 AGAT 5471 >seq1435 Length=77956 Score = 105 bits (116), Expect = 2e-17 Identities = 232/344 (67%), Gaps = 14/344 (4%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || ||||| ||| ||| || | || ||||||||| |||| || ||| ||||||| Sbjct 28101 GACTTTATAAATATAGAGCTTGTTCAGTTTTCTAATGCTGATAACCAGCGTGCTATTCCC 28160 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGT-TGTTTCAA--- 279921 | | ||||||||||||||||| || || | || | ||| | | || | || Sbjct 28161 AACATTATGGATGGTTTGAAACCATCTCAAAGAAAAGTGTTATATACTATGCTGAAACGT 28220 Query 279922 -AAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATG 279980 | ||||| || |||||| ||||||||| | || || ||| || || Sbjct 28221 TACGAAAAG-----AAAGAAATTAAAGTTGCTCAGCTTGCTGGAGCTGTATCTGAGTTGA 28275 Query 279981 CAGGTTATCATCACGGTGAA--GCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGA 280038 | | |||||||| |||||| | || | || | |||| | ||||| |||||||| Sbjct 28276 CCGCATATCATCATGGTGAAATGAGTATGGCTAA--TACTATAATTGGTCTAGCCCAAGA 28333 Query 280039 TTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTAT 280098 |||| | | ||| ||||| | ||||| ||| |||| |||||| |||||| |||| | Sbjct 28334 TTTTGTTGGTTCTAACAATATTAATCTTCTTCTACCACTTGGTCAGTTTGGTAGTCGTCT 28393 Query 280099 TCACAATGGAAAAGATCATGGTAGTGCTCGTTACATACATACAT 280142 | | |||||||||| || |||| ||||||| || ||||| Sbjct 28394 TAATGGTGGAAAAGATGCTGCTAGTCCTCGTTATATTTTTACAT 28437 Score = 95.1 bits (104), Expect = 3e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 279064 TGGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGG-TCGTAAATCTCAAGAATGTG 279122 ||| || ||||| || ||||||||||| ||||||| || | | |||| |||||| Sbjct 27320 TGGAATACCAAAGCTAGATGATGCAAATAAGGCTGGAACATCATTATCATCAA-AATGTG 27378 Query 279123 CTTTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTA 279182 |||| | | || || |||||||| ||| | |||| || || ||| || ||||| Sbjct 27379 TTTTAATATTAACAGAAGGAGATTCCGCTAAATCGCTTGCTATCGCAGGTCTAAGTGTTA 27438 Query 279183 TTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATG 279233 ||||||| ||| ||||| || ||||||||| |||||||| || | |||| Sbjct 27439 TTGGTCGCGATTTTTATGGAGTCTTTCCTTTACGAGGTAAATTACTCAATG 27489 >seq1434 Length=77931 Score = 105 bits (116), Expect = 2e-17 Identities = 232/344 (67%), Gaps = 14/344 (4%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || ||||| ||| ||| || | || ||||||||| |||| || ||| ||||||| Sbjct 28101 GACTTTATAAATATAGAGCTTGTTCAGTTTTCTAATGCTGATAACCAGCGTGCTATTCCC 28160 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGT-TGTTTCAA--- 279921 | | ||||||||||||||||| || || | || | ||| | | || | || Sbjct 28161 AACATTATGGATGGTTTGAAACCATCTCAAAGAAAAGTGTTATATACTATGCTGAAACGT 28220 Query 279922 -AAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATG 279980 | ||||| || |||||| ||||||||| | || || ||| || || Sbjct 28221 TACGAAAAG-----AAAGAAATTAAAGTTGCTCAGCTTGCTGGAGCTGTATCTGAGTTGA 28275 Query 279981 CAGGTTATCATCACGGTGAA--GCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGA 280038 | | |||||||| |||||| | || | || | |||| | ||||| |||||||| Sbjct 28276 CCGCATATCATCATGGTGAAATGAGTATGGCTAA--TACTATAATTGGTCTAGCCCAAGA 28333 Query 280039 TTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTAT 280098 |||| | | ||| ||||| | ||||| ||| |||| |||||| |||||| |||| | Sbjct 28334 TTTTGTTGGTTCTAACAATATTAATCTTCTTCTACCACTTGGTCAGTTTGGTAGTCGTCT 28393 Query 280099 TCACAATGGAAAAGATCATGGTAGTGCTCGTTACATACATACAT 280142 | | |||||||||| || |||| ||||||| || ||||| Sbjct 28394 TAATGGTGGAAAAGATGCTGCTAGTCCTCGTTATATTTTTACAT 28437 Score = 95.1 bits (104), Expect = 3e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 279064 TGGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGG-TCGTAAATCTCAAGAATGTG 279122 ||| || ||||| || ||||||||||| ||||||| || | | |||| |||||| Sbjct 27320 TGGAATACCAAAGCTAGATGATGCAAATAAGGCTGGAACATCATTATCATCAA-AATGTG 27378 Query 279123 CTTTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTA 279182 |||| | | || || |||||||| ||| | |||| || || ||| || ||||| Sbjct 27379 TTTTAATATTAACAGAAGGAGATTCCGCTAAATCGCTTGCTATCGCAGGTCTAAGTGTTA 27438 Query 279183 TTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATG 279233 ||||||| ||| ||||| || ||||||||| |||||||| || | |||| Sbjct 27439 TTGGTCGCGATTTTTATGGAGTCTTTCCTTTACGAGGTAAATTACTCAATG 27489 >seq76 Length=13269 Score = 95.1 bits (104), Expect = 3e-14 Identities = 111/149 (74%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 167205 ATTTCAAAAGAGCACCTAA---AATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 |||| ||| |||||| ||| |||| || ||| |||| | | ||||||||||||| Sbjct 5508 ATTTGAAATGAGCACATAAGTGAATC---ATCAATACTCATAAGAGCACCAGCATTATCA 5452 Query 167262 AATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAAT 167321 |||||| ||| || ||||| || || |||||||| | || | || |||| ||| Sbjct 5451 AATTCACCACAATAGTTGGGTGCAGAGAAAACAGTAACAAGTTGTCTCTTAGAAAAAAAT 5392 Query 167322 TCATAACCATCTTCAACAACTTCATGGGC 167350 ||||| |||||||||||||||| ||| || Sbjct 5391 TCATATCCATCTTCAACAACTTGATGTGC 5363 >seq1633 Length=37851 Score = 87.8 bits (96), Expect = 4e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 167203 ATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGA 167262 ||| || ||| || || | | || || || || |||| | ||||||||||||||| | Sbjct 28329 ATACTTGAAATGAACAAGTGAGATTTTCATCAACATTCATCATACCACCAGCATTATCAA 28270 Query 167263 ATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATT 167322 ||||| |||||| ||||| || |||| ||||||| || ||| | ||| |||| Sbjct 28269 ATTCACCACAATAATTAGGTGCAGAGAATAGGGTAACTAGTTGACGCCTAGCAAAAAATT 28210 Query 167323 CATAACCATCTTCAACAACTTCATGGGCACG 167353 | || |||||||| ||||||| ||| || || Sbjct 28209 CGTATCCATCTTCTACAACTTGATGTGCCCG 28179 >seq1186 Length=37831 Score = 87.8 bits (96), Expect = 4e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 167203 ATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGA 167262 ||| || ||| || || | | || || || || |||| | ||||||||||||||| | Sbjct 9503 ATACTTGAAATGAACAAGTGAGATTTTCATCAACATTCATCATACCACCAGCATTATCAA 9562 Query 167263 ATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATT 167322 ||||| |||||| ||||| || |||| ||||||| || ||| | ||| |||| Sbjct 9563 ATTCACCACAATAATTAGGTGCAGAGAATAGGGTAACTAGTTGACGCCTAGCAAAAAATT 9622 Query 167323 CATAACCATCTTCAACAACTTCATGGGCACG 167353 | || |||||||| ||||||| ||| || || Sbjct 9623 CGTATCCATCTTCTACAACTTGATGTGCCCG 9653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186787907714157