Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq62 129 6e-25 seq1466 84.2 2e-11 seq1258 84.2 2e-11 seq1155 84.2 2e-11 seq630 82.4 7e-11 >seq62 Length=56742 Score = 129 bits (142), Expect = 6e-25 Identities = 619/971 (64%), Gaps = 31/971 (3%) Strand=Plus/Minus Query 146883 TAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCT 146942 |||||||| || || |||||||| || || | | |||||||| ||| | |||||| Sbjct 51793 TAAATACTTGTTTACTACTTGAAATTCACCTGATAAAACACGTCTAGAATAAATATTGCT 51734 Query 146943 AGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCAT 147002 || ||||| ||||||| ||||||||||| | ||||| | || | ||| |||||||| Sbjct 51733 CGTAAAAGGTTCAAAAGCTTCATTATTGCCGAGAATTTGTGAAGTAGATGCTGTAGGCAT 51674 Query 147003 GTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTG 147062 | | ||| | ||||| | ||| ||| || | | |||||| || | Sbjct 51673 AGGTGAAATCAAAAGGCTATTTCTAACACCATACTTTTTTATATCTTGCTTCAACGTGTT 51614 Query 147063 CCAGTCCCACATCGACGAG--GGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGA 147120 ||| ||||| | || || ||||| || |||||||| || ||||| || | ||| | Sbjct 51613 CCAATCCCAAA--GATCAGTAGGCGTTACATTCCACATATCATACTGAAGAATTCCCTGG 51556 Query 147121 CTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTT 147180 ||| ||||| || || | || || || | | || |||||||| | Sbjct 51555 CTGATAGGACTACCTTCGTATGTTTCATATGGACCATATTCTTTAGCTAATTCACATGAT 51496 Query 147181 GCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCT 147240 || || ||||| |||| || || ||||| |||||| | |||| | |||||| Sbjct 51495 GCTTCAAGCGCACCATGATAAATTGTTTCAAATATTTGTATATTTAATTTTTTAGCTTCT 51436 Query 147241 TCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACG 147300 || || || ||||||| | | | ||||| ||||| || || || || | ||| || Sbjct 51435 TCACTGTCAAAAGGCATCCTTAATAATACAAATGCATCAGCTAATCCTTGTACACCAACT 51376 Query 147301 CCGATAGGTCGATGCTTTTCGTTGCTGCGCT-TCGCGCTCGCT-ATGGGATAGTGGTTGC 147358 || || || | ||| ||| || | | | || | || |||||| ||| | Sbjct 51375 CCAATTGGCCTATGACGCATGTT--TGAATTATAGGCTTCAATAATAGGATAGAAGTTTC 51318 Query 147359 GATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGA 147418 |||||||| ||||| | ||||| || ||||||| || | || | ||||| || | Sbjct 51317 TATCAATAACTTTGTTTAAATTACGAACAGCAACTTTTGTAACGGTATGAAGTTTATCAA 51258 Query 147419 AAT------CATAAGT----CCCGTCTTCGA--CACG-TACGCATTGGTTCACGGCGATA 147465 ||| ||| ||| | || | || | | || || || | | |||| Sbjct 51257 AATGAAATACATTAGTTGAATCGGTACTAGATTTAGGATAAACAAATTTTGAAAGAGATA 51198 Query 147466 --GACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCT--GTACTGCACGATTTCGGC 147521 || || | |||||| || || ||||| || | | | | ||| | | ||||| | Sbjct 51197 ACGATGCTAAATTGCACACAGCAGTCTCATC--CTTTGATGAGTATTCAATTATTTCTGT 51140 Query 147522 GCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGC 147581 |||||| ||||| | || || || || | ||||| ||||||||||| | ||| || || Sbjct 51139 GCACAGATTGCTAGACTTAATAACACCAAGATTTTTTTGATTGCTTTTACTATTACAAGC 51080 Query 147582 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT--AAACCTA 147639 |||||| | ||||| || ||| || || || | ||| | ||| | || ||| | | Sbjct 51079 ATCTTTGTAAAGCATATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTATGAAAAACCA 51020 Query 147640 TGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTAC 147699 | || | || ||| | | | || || || || ||||| ||| |||| Sbjct 51019 T--AGTTTTTGAGCTTCAATTTGACGTTTGTATCGCCCTTCTTTTTCATACTTTATGTAC 50962 Query 147700 AACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATC 147759 | ||||||| || ||||| ||||| | ||| || || || | ||| || ||||| Sbjct 50961 AGTTCTTCAAACTTTTCACCGTAACAATCCGAAAGTCCAGGGCATTCATGAGGGCACATA 50902 Query 147760 AGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCG 147819 || ||||| || | | | || ||| |||||||| ||| || | ||| | || Sbjct 50901 AGTGACCAGATTCCATTACTTTCTACTCGTTTCATAAACAAATCTGGTATCCATAAGGCA 50842 Query 147820 TACATAAGATC 147830 || | |||||| Sbjct 50841 TAGAAAAGATC 50831 >seq1466 Length=125466 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | |||| || ||||||| || || || | || | |||||| Sbjct 71659 ACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACCATCTTCA 71600 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || || | | || || | |||||||||||| || || |||||||| || | Sbjct 71599 AGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGA 71540 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | ||| | |||||| | || || ||||| | || | ||||| Sbjct 71539 ATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGTTTTT 71480 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | |||||||| ||||||||||| Sbjct 71479 CCAGTTAATGTTTTTATAAAAATCTGCAT 71451 >seq1258 Length=100613 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | |||| || ||||||| || || || | || | |||||| Sbjct 40418 ACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACCATCTTCA 40359 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || || | | || || | |||||||||||| || || |||||||| || | Sbjct 40358 AGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGA 40299 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | ||| | |||||| | || || ||||| | || | ||||| Sbjct 40298 ATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGTTTTT 40239 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | |||||||| ||||||||||| Sbjct 40238 CCAGTTAATGTTTTTATAAAAATCTGCAT 40210 >seq1155 Length=100669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | |||| || ||||||| || || || | || | |||||| Sbjct 60252 ACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACCATCTTCA 60311 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || || | | || || | |||||||||||| || || |||||||| || | Sbjct 60312 AGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGA 60371 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | ||| | |||||| | || || ||||| | || | ||||| Sbjct 60372 ATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGTTTTT 60431 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | |||||||| ||||||||||| Sbjct 60432 CCAGTTAATGTTTTTATAAAAATCTGCAT 60460 >seq630 Length=36350 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | ||| | ||| | | | || || ||||||| |||||||| | ||| | Sbjct 7 AATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGGGTTCTT 66 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| | ||||| || | | | || | | ||||||||||||||||| ||||| Sbjct 67 CCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTATACCTTCC 126 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || || || ||| | | ||| | ||| || | || |||||||| | || Sbjct 127 TTGTCTTGGATCTTAGATTTTACATTTTCAATAGTGTCAGAAGGATCCACTTCAAGTGTA 186 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||| ||||| || ||||| || ||||||||||| Sbjct 187 ATAGTTTTTCCAGTTAGTGTTTTAATAAAAATCTGCAT 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601447343320