Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1466 123 2e-23 seq1258 123 2e-23 seq1155 123 2e-23 >seq1466 Length=125466 Score = 123 bits (136), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||| ||||||||||||| |||||| | || || | ||||| | | ||| | Sbjct 71451 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTG-ACCCATC 71509 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| |||||| || ||||| ||||| || || ||||| Sbjct 71510 TGATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCA 71569 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGATTAC 25351 || ||||| || | || || || ||||| ||||||| |||| | | ||| ||||| Sbjct 71570 ACAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCA--GATTAT 71627 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| ||||||| ||||| || ||||||| || ||||| | | ||||| Sbjct 71628 AATGTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGG 71677 >seq1258 Length=100613 Score = 123 bits (136), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||| ||||||||||||| |||||| | || || | ||||| | | ||| | Sbjct 40210 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTG-ACCCATC 40268 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| |||||| || ||||| ||||| || || ||||| Sbjct 40269 TGATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCA 40328 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGATTAC 25351 || ||||| || | || || || ||||| ||||||| |||| | | ||| ||||| Sbjct 40329 ACAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCA--GATTAT 40386 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| ||||||| ||||| || ||||||| || ||||| | | ||||| Sbjct 40387 AATGTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGG 40436 >seq1155 Length=100669 Score = 123 bits (136), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||| ||||||||||||| |||||| | || || | ||||| | | ||| | Sbjct 60460 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTG-ACCCATC 60402 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| |||||| || ||||| ||||| || || ||||| Sbjct 60401 TGATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCA 60342 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGATTAC 25351 || ||||| || | || || || ||||| ||||||| |||| | | ||| ||||| Sbjct 60341 ACAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCA--GATTAT 60284 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| ||||||| ||||| || ||||||| || ||||| | | ||||| Sbjct 60283 AATGTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGG 60234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445085292255840