Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq62 565 3e-156 seq1531 140 4e-28 seq1530 140 4e-28 >seq62 Length=56742 Score = 565 bits (626), Expect = 3e-156 Identities = 1110/1624 (68%), Gaps = 49/1624 (3%) Strand=Plus/Minus Query 68644 ATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGA 68703 |||| | ||| || || ||||||||||| | ||| | ||| | || || | | Sbjct 51849 ATAAGTTGATTTTTTATATCATCATTCCAAATATTTAAATTAACCAAATCGCTTAGTAAA 51790 Query 68704 TGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTA 68763 | | || |||| ||||||||| || ||||| || | | || |||||||| || ||| Sbjct 51789 TACTTGTTTACTACTTGAAATTCACCTGATAAAACACGTCTAGAATAAATATTGCTCGTA 51730 Query 68764 TATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGT 68823 | ||||| | || ||||||||| || |||||||| | ||| ||||| || ||||||||| Sbjct 51729 AAAGGTTCAAAAGCTTCATTATTGCCGAGAATTTGTGAAGTAGATGCTGTAGGCATAGGT 51670 Query 68824 GCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTT--TTAGATGT-TTC 68880 | | ||| | |||||||||| ||||| || | || ||||| || | || ||| Sbjct 51669 GAAATCAAAAGGCTATTTCTAACACCATACTTTTTTAT---ATCTTGCTTCAACGTGTTC 51613 Query 68881 CAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTT 68940 |||||||||||||||| || |||||||| | ||| || || |||||||| | || Sbjct 51612 CAATCCCAAAGATCAGTAGGCGTTACATTCCACATATCATACTGAAGAATTCCCTGGCTG 51553 Query 68941 GCATATGAT--CCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTG 68998 ||| || || | ||||||||||| || || | | || ||||| |||||| || Sbjct 51552 --ATAGGACTACCTTCGTATGTTTCATATGGACCATATTCTTTAGCTAATTCACATGATG 51495 Query 68999 CCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTA 69058 | || | ||||| | |||||||||||| || || | |||| | | || |||||| Sbjct 51494 CTTCAAGCGCACCATGATAAATTGTTTCAAATATTTGTATATTTAATTTTTTAGCTTCTT 51435 Query 69059 GACTATCGAATGG-ATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATA 69117 ||| || || || || | ||| | | ||||||||| || ||||| || || |||| Sbjct 51434 CACTGTCAAAAGGCATCCT-TAATAATACAAATGCATCAGCTAATCCTTGTACACCAACT 51376 Query 69118 CCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATA 69177 || || || ||||| | | | |||||| | | ||||| ||||||||| | || || Sbjct 51375 CCAATTGGCCTATGACGCATGTTTGAATTATAGGCTTCAATAATAGGATAGAAGTTTCTA 51316 Query 69178 TCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAA 69237 || |||| ||| || | ||| || || | ||||| ||| | ||||| |||| Sbjct 51315 TCAATAACTTTGTTTAAATTACGAACAGCAACTTTTGTAACGGTATGAAGTTTATCAAAA 51256 Query 69238 TCAAATC--------------GTCC---ATCTATAACAAACATATTC----AGTGCTACA 69276 | |||| || | || || | ||||| ||| || | || Sbjct 51255 TGAAATACATTAGTTGAATCGGTACTAGATTTAGGATAAACAAATTTTGAAAGAGATAAC 51196 Query 69277 GATGCTAGATTACAAACTGCTACCTCAT---TAGAATTTGCATATTGTATTATCTCTGTA 69333 ||||||| ||| || || || ||||| | || || |||| ||||| ||||| Sbjct 51195 GATGCTAAATTGCACACAGCAGTCTCATCCTTTGA---TGAGTATTCAATTATTTCTGTG 51139 Query 69334 CATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCG 69393 || ||||| ||| | || ||| || ||||||| ||||| || || | ||||| || Sbjct 51138 CACAGATTGCTAGACTTAATAACACCAAGATTTTTTTGATTGCTTTTACTATTACAAGCA 51079 Query 69394 TCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAA 69453 || |||||||| ||| | || |||||||||||| |||| ||| | || | ||| Sbjct 51078 TCTTTGTAAAGCATATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTATGAAAAACCAT 51019 Query 69454 ACGACCCTAGCATTTATT--ACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATA 69511 | ||| | ||| ||| | |||| ||| ||||||||||| | | | || | Sbjct 51018 AGTTTTTGAGCTTCAATTTGACGTT--TGTATCGCCCTTCTTTTTCATACTTTATGTACA 50961 Query 69512 GCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCA 69571 | ||| || | || || || ||| | |||||| ||||||| || ||||| | Sbjct 50960 GTTCTTCAAACTTTTCACCGTAACAATCCGAAAGTCCAGGGCATTCATGAGGGCACATAA 50901 Query 69572 ATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTA 69631 |||||| | ||| | | |||||||||||||| | ||| || ||||| | || | Sbjct 50900 GTGACCAGATTCCATTACTTTCTACTCGTTTCATAAACAAATCTGGTATCCATAAGGC-A 50842 Query 69632 TA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAAC 69690 || || ||||| || | | | | || ||| | || ||||||||| |||||| | ||| Sbjct 50841 TAGAAAAGATCCCTAGCACGAATATCCTCACTACCAGTATTTTTTCGAAGATCTAAAAAT 50782 Query 69691 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA-TGACTCCCGGTCGTTTATT 69749 || | ||||| | ||||||||| |||| |||||| || | ||| || || || || || Sbjct 50781 TCTACTATATCGGCATGCCATGGCTCTAAATATATGGCAAATGAG-CCTGGACGCTTGTT 50723 Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || || || | ||| | | | || || || |||| | | |||| ||| || Sbjct 50722 TCCACCTTGGTCAACGTAACGAGAACAATTGTTGTAAACTCGTAAAAGTGGAACAATTCC 50663 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| |||||||| ||||| | |||||| | || | || ||||||||| |||| Sbjct 50662 ATTAGAATTACCATTCGTTCCTGCAATATATGTACCACAAGCTCGAATATTATGAATATG 50603 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 ||| || | ||| || || | ||| ||||| | |||||| ||| | ||| ||| |||| Sbjct 50602 TAGTCCCACTCCACCGGCAAATTTGGAGATCATAGCACAGTTTTTAAGTGTATCAAATAT 50543 Query 69930 ACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTA 69988 ||| ||||||||||| ||| |||| | || || |||||| |||||||||||| || | Sbjct 50542 ACCTTCTATGCTATCGTCTTTCATTGCCAACAA-AAAACAACTAGACATTTGAGGACGAG 50484 Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048 ||||| ||||| ||||| || |||| ||| ||||| ||||| ||| || | | Sbjct 50483 GTGTTCCAGCATTGAATAAGGTTGGAGTTGCATGAGTAAACCAACGTTCTGACATATAGT 50424 Query 70049 TGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCA 70108 | |||||||| || || ||||| ||||| ||| || || | || || | ||||| Sbjct 50423 TATATGTTTCTATTGCAGATTCAATATCATCAAAATGTATACCAACAGCAACTCTCATCA 50364 Query 70109 ACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 ||||||| ||||||| ||| || |||| || ||| |||| || || ||| |||| | Sbjct 50363 ACATATGTTGAGGTCTTTCCACAATTTTTCCATCTATCTTCATTAGATAAGATCTTTCAA 50304 Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228 | |||||||| ||||||||| || | ||||||| | |||| ||| | ||||||| Sbjct 50303 GGGTTTTAAAACCAAAATAGGAATAATCATAGTCTCTATGATAAACTATAGCTGAATTTA 50244 Query 70229 GTTT 70232 ||| Sbjct 50243 ATTT 50240 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 70349 TTGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGAT 70408 ||||||| ||||| | ||| |||| | ||||| || |||| ||||||||| || |||| Sbjct 49460 TTGTTTCTTTGTGGAGATTAGATACAACAATTCTAGCAGCTAAAATAGCATAATCTGGAT 49401 Query 70409 GTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAA 70468 || ||||||| | ||| || |||||||||||||| |||||| ||| |||||||| | Sbjct 49400 GTCGTGTAGTCATTGAAGCAGCAATTTCCGCAGCTAAGTTATCTAGTTCAATAGTTGTTA 49341 Query 70469 CTCCGTTATATAGCCCTTGAATAACTTT 70496 |||| ||||| || | ||||||||| Sbjct 49340 CTCCAGCATATATTCCATTAATAACTTT 49313 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 68398 GGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGC 68457 || |||| ||||| ||||||||| || ||||| |||||| ||||||| || || ||| Sbjct 52145 GGCTTTGAACGTAAATAGTACATTCCAGTTTTGAGACCTTTCTTCCATCCATAAAAGTGC 52086 Query 68458 ATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGA 68517 | |||||| || | | |||| || || ||| ||||| | || ||||||||| Sbjct 52085 AAACTTGTCAGACGACCAAAGTTTGGCTCTGCCATAAATATATTGAGAGACTGACTTTGA 52026 Query 68518 TCGATGAAAGCTCCTCTATCTGCCGCCAT 68546 || || || || |||| ||| || ||||| Sbjct 52025 TCAATAAAGGCACCTCGATCAGCTGCCAT 51997 >seq1531 Length=18023 Score = 140 bits (154), Expect = 4e-28 Identities = 149/194 (77%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 ||||||| |||||| || ||||| | ||||||||||| ||||| || |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC-TGAACAAAATCTTTC 39996 || |||||||| ||||| |||| || |||| |||||| || | ||||| | ||| Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAA-CATTC 8724 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 ||| |||||||| || || ||||||||||| ||||| |||||||||| ||| || Sbjct 8725 AACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATAT 8784 Query 40057 AAAATATTTTTCAT 40070 ||||| | | |||| Sbjct 8785 AAAATGTCTCTCAT 8798 Score = 95.1 bits (104), Expect = 2e-14 Identities = 190/276 (69%), Gaps = 12/276 (4%) Strand=Plus/Plus Query 39421 ttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCAT 39480 ||||| |||||| || | || || | ||| || |||||||||| ||| || || Sbjct 8035 TTTTTCAAATCCCAAAGCAACAAGCAGACGATCAGCTACAAATTCTA--TATACTTACA- 8091 Query 39481 CATTT---CACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTT 39537 ||| | ||||||||||||| || || || || |||| ||| || | | ||| ||||| Sbjct 8092 CATATCAGCACAATTCATTCCAATAAGATTCACAGGTAAAGCTTCACTGAAAAATTCTTT 8151 Query 39538 TTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGG-ATGCA 39596 ||| || || || || || || || || | | |||| |||| | ||| || | Sbjct 8152 TTCAATATCAACTGCTTCAGTGATAATTTGTTTGACTA---AATCAAATGATGGTTTGTA 8208 Query 39597 ATAAATGT--TTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAAT 39654 | |||| |||||||||||||| || || ||| || || || ||||||||||| || Sbjct 8209 TTTTATGTAGTTAAACATTAAGCAAGCAAAATCAGTGTGAAGTCCTTCATCTCTACTGAT 8268 Query 39655 TAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACC 39690 | ||| ||| || ||||||||||| || || Sbjct 8269 AAGTTCATTACTGAAACAAAGTCCAGGCATAAGTCC 8304 >seq1530 Length=18023 Score = 140 bits (154), Expect = 4e-28 Identities = 149/194 (77%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 ||||||| |||||| || ||||| | ||||||||||| ||||| || |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC-TGAACAAAATCTTTC 39996 || |||||||| ||||| |||| || |||| |||||| || | ||||| | ||| Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAA-CATTC 8724 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 ||| |||||||| || || ||||||||||| ||||| |||||||||| ||| || Sbjct 8725 AACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATAT 8784 Query 40057 AAAATATTTTTCAT 40070 ||||| | | |||| Sbjct 8785 AAAATGTCTCTCAT 8798 Score = 95.1 bits (104), Expect = 2e-14 Identities = 190/276 (69%), Gaps = 12/276 (4%) Strand=Plus/Plus Query 39421 ttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCAT 39480 ||||| |||||| || | || || | ||| || |||||||||| ||| || || Sbjct 8035 TTTTTCAAATCCCAAAGCAACAAGCAGACGATCAGCTACAAATTCTA--TATACTTACA- 8091 Query 39481 CATTT---CACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTT 39537 ||| | ||||||||||||| || || || || |||| ||| || | | ||| ||||| Sbjct 8092 CATATCAGCACAATTCATTCCAATAAGATTCACAGGTAAAGCTTCACTGAAAAATTCTTT 8151 Query 39538 TTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGG-ATGCA 39596 ||| || || || || || || || || | | |||| |||| | ||| || | Sbjct 8152 TTCAATATCAACTGCTTCAGTGATAATTTGTTTGACTA---AATCAAATGATGGTTTGTA 8208 Query 39597 ATAAATGT--TTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAAT 39654 | |||| |||||||||||||| || || ||| || || || ||||||||||| || Sbjct 8209 TTTTATGTAGTTAAACATTAAGCAAGCAAAATCAGTGTGAAGTCCTTCATCTCTACTGAT 8268 Query 39655 TAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACC 39690 | ||| ||| || ||||||||||| || || Sbjct 8269 AAGTTCATTACTGAAACAAAGTCCAGGCATAAGTCC 8304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686894744128680