Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1531 120 2e-22 seq1530 120 2e-22 seq342 102 6e-17 seq1620 86.0 5e-12 seq723 86.0 5e-12 >seq1531 Length=18023 Score = 120 bits (132), Expect = 2e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 43834 ACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAA 43893 |||||||||||| | ||||| || |||||||| || || || || || |||||||| Sbjct 8791 ACATTTTATATCCCATATATTGGCATTCTTTGCTGCTAGTGATGGTATTGTTAATGAAAA 8732 Query 43894 TTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTT 43953 ||||| | ||||| | ||||| |||| || || || ||| |||||||| || Sbjct 8731 CCTGGTTGAATGTTTTGCAAATGAAGTACAATGGCCTGAGGCTAGATTCTTTTATGGATT 8672 Query 43954 TCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013 ||||||||| || |||||||||||||| |||||||| || | | || || || || || Sbjct 8671 TCAAATTGCTATTGAAAATATTCATTCTGAAATGTATAGCTTATTAATTGAAACATATAT 8612 Query 44014 CAAAGA 44019 ||||| Sbjct 8611 TAAAGA 8606 Score = 86.0 bits (94), Expect = 5e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || || ||||||||||||||||| | ||||| ||||| ||||||||||||||| Sbjct 7967 AATCCATTCGATTTTATGGAAAATATCAGCCTAGAAGGTAAAACTAACTTTTTTGAAAAA 7908 Query 44555 CGCGTTGGAGAATATCAGCG 44574 || ||||| ||||||||||| Sbjct 7907 CGAGTTGGGGAATATCAGCG 7888 >seq1530 Length=18023 Score = 120 bits (132), Expect = 2e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 43834 ACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAA 43893 |||||||||||| | ||||| || |||||||| || || || || || |||||||| Sbjct 8791 ACATTTTATATCCCATATATTGGCATTCTTTGCTGCTAGTGATGGTATTGTTAATGAAAA 8732 Query 43894 TTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTT 43953 ||||| | ||||| | ||||| |||| || || || ||| |||||||| || Sbjct 8731 CCTGGTTGAATGTTTTGCAAATGAAGTACAATGGCCTGAGGCTAGATTCTTTTATGGATT 8672 Query 43954 TCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013 ||||||||| || |||||||||||||| |||||||| || | | || || || || || Sbjct 8671 TCAAATTGCTATTGAAAATATTCATTCTGAAATGTATAGCTTATTAATTGAAACATATAT 8612 Query 44014 CAAAGA 44019 ||||| Sbjct 8611 TAAAGA 8606 Score = 86.0 bits (94), Expect = 5e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || || ||||||||||||||||| | ||||| ||||| ||||||||||||||| Sbjct 7967 AATCCATTCGATTTTATGGAAAATATCAGCCTAGAAGGTAAAACTAACTTTTTTGAAAAA 7908 Query 44555 CGCGTTGGAGAATATCAGCG 44574 || ||||| ||||||||||| Sbjct 7907 CGAGTTGGGGAATATCAGCG 7888 >seq342 Length=37847 Score = 102 bits (112), Expect = 6e-17 Identities = 154/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 19558 ATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT---TC---TGGTGTAAAT 19611 || ||| | |||||| | || ||||| ||||| ||| ||||| || | | | | | Sbjct 28944 ATTATATTTGATGAAATTGATGCAATTTGTAAACAACGAGGTCAATCAAATAGAGGGACT 28885 Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 | |||||||| |||||||||||||| || || || ||| |||| || ||| | ||||| Sbjct 28884 GCTGTACATGATACTGTTGTCAATCAGCTACTTTCTAAAATAGATGGAGTTCATCAACTC 28825 Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA--CAGCGCCTTAT 19729 |||||||| | ||||||| ||||| ||| | || |||| || |||| ||| | Sbjct 28824 AATAATATACTCATTATTGGTATGACAAATCGTAAAGATCTAATTGATTCAGC-ACTTCT 28766 Query 19730 TACGACCCGGTCGGTTGGAAATAAAGATCGAAAT 19763 || |||| ||| | || |||||| || | ||||| Sbjct 28765 TA-GACCTGGTAGATTTGAAATACAGCTTGAAAT 28733 Score = 96.9 bits (106), Expect = 3e-15 Identities = 182/266 (68%), Gaps = 9/266 (3%) Strand=Plus/Minus Query 19272 AATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGG 19331 ||| ||| | |||||||| ||||| | ||| || |||| | || || | | || Sbjct 29289 AATATTTAGACGAGCATTTTCTTCGCGAATATTTCCTCCAGAAATAGTTGAAGAGCTAGG 29230 Query 19332 ATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAAT 19391 || || ||||| | || | || |||||||| ||||| || ||||||||| | | Sbjct 29229 ATTGAAGCATGTAAGAGGTATATTACTTTATGGCCCACCAGGAACAGGAAAAACACTCTT 29170 Query 19392 TGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCC 19448 || | || || ||||| ||| || | | ||||| |||||| | ||||| || Sbjct 29169 AGCTCGTCAAATTGGTAAAATGTTAAATAGTAGAGAACCT---AAAATTATTAATGGACC 29113 Query 19449 TGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGA 19508 |||||| | ||||||| ||| || |||| |||| ||| | || ||||||| || Sbjct 29112 TGAAATTCTTAATAAATTTGTTGGAGAATCCGAAGCTAATATTAGAAAATTGTTTGAAGA 29053 Query 19509 CGCTGAAGAAGAACAAAAACGTTTAG 19534 ||||||||||||| ||||||||| Sbjct 29052 TGCTGAAGAAGAAC---AACGTTTAG 29030 >seq1620 Length=46792 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 115023 AGATAATGAATGGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACT 115082 |||| | |||||||||||| |||| |||||| ||||| ||||| | || || ||| Sbjct 24953 AGATGACCAATGGTCATACGACTTGGAATAGCATGAGGATTGATAATAATATCGGGAACT 25012 Query 115083 AACCCGTCGGCTGTGAACGGCATGTCGTGCTGATCGTACATCATTCCACAAGTTCCTTTT 115142 | || || || || |||||||| || | ||| || | || ||||| || |||||| Sbjct 25013 ATTCCATCAGCAGTAAACGGCATATCTTCTTGACGATATGTTATACCACATGTACCTTTT 25072 Query 115143 TGAGC-GGTAAACGATGCAAATTTATCACCAATCTCAGG 115180 ||| | || || |||||||||||||||||| | ||| Sbjct 25073 TGACCATGTCTAC-TTGCAAATTTATCACCAATTTGAGG 25110 >seq723 Length=46792 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 115023 AGATAATGAATGGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACT 115082 |||| | |||||||||||| |||| |||||| ||||| ||||| | || || ||| Sbjct 21840 AGATGACCAATGGTCATACGACTTGGAATAGCATGAGGATTGATAATAATATCGGGAACT 21781 Query 115083 AACCCGTCGGCTGTGAACGGCATGTCGTGCTGATCGTACATCATTCCACAAGTTCCTTTT 115142 | || || || || |||||||| || | ||| || | || ||||| || |||||| Sbjct 21780 ATTCCATCAGCAGTAAACGGCATATCTTCTTGACGATATGTTATACCACATGTACCTTTT 21721 Query 115143 TGAGC-GGTAAACGATGCAAATTTATCACCAATCTCAGG 115180 ||| | || || |||||||||||||||||| | ||| Sbjct 21720 TGACCATGTCTAC-TTGCAAATTTATCACCAATTTGAGG 21683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397448070380185