Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq62 206 2e-48 >seq62 Length=56742 Score = 206 bits (228), Expect = 2e-48 Identities = 963/1509 (64%), Gaps = 51/1509 (3%) Strand=Plus/Minus Query 130762 TTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGA 130821 |||||| ||||| | | || |||||| ||||| |||||||| || |||||||| | Sbjct 51775 TTGAAATTCACCTGATAAAACACGTCTAGAATAAATATTGCTCGTAAAAGGTTCAAAAGC 51716 Query 130822 TTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGA 130881 ||| || ||||||| ||||||| |||| ||| || ||||| || | || || Sbjct 51715 TTCATTATTGCCGAGAATTTGTGAAGTAGATGCTGTAGGCATAGGTGAAATCAAAAGGCT 51656 Query 130882 ATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGT 130941 ||| | || ||| | | | | || | | ||||||| | ||||||||| ||| || Sbjct 51655 ATTTCTAACACCATACTTTTTTATATCTTGCTTCAACGTGTTCCAATCCCAAAGATCAGT 51596 Query 130942 AGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTC 131001 ||| | ||||| |||||||||| | || || || || | ||| ||||| ||| Sbjct 51595 AGGCGTTACATT---CCACATATCATACTGAAGAATTCCCTGGCTGATAGGACTACCTTC 51539 Query 131002 GAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGT-TGCTAGCTTCCAAAGCTCCGT 131060 | | | ||| || || | | ||| | || || | ||||| | || || | Sbjct 51538 GTATGTTTCATATGGACCATATTCTTTAGCTAATTCACATGAT-GCTTCAAGCGCACCAT 51480 Query 131061 AATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAA 131120 |||||| ||||| |||||| ||||||||| ||| |||| | || || |||| | Sbjct 51479 GATAAATTGTTTCAAATATTTGTATATTTAATTTTTTAGCTTCTTCACTGTCAAAAGGCA 51420 Query 131121 ATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGT- 131179 | | ||| | ||| || || || | || |||| ||||| || | || ||||| Sbjct 51419 TCCTTAATAATACAAATGCATCAGCTAATCCTTGTACACCAACTCCAATTGGCCTATGAC 51360 Query 131180 -----TTTAAATTACATTTACGCGAACATTCGGTGGGATAAAGGTTAATGTCAATTATTT 131234 ||| ||||| || || || | ||||| | ||| | ||||| | || Sbjct 51359 GCATGTTTGAATTA----TAGGCTTCAATAA--TAGGATAGAAGTTTCTATCAATAACTT 51306 Query 131235 TGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGC 131294 |||||||||| || || ||| || ||| ||| | | | ||| || |||| ||| Sbjct 51305 TGTTTAAATTACGAACAGCAACTTTTGTAACGGTATGAAGTTTATCAAAATGAAATACAT 51246 Query 131295 CAGTT---TCG-----AGGTTTAC---AAATTGATTT----ACACATATTGACGCCAGAT 131339 |||| ||| || |||| ||| |||| | | ||| || || | || Sbjct 51245 TAGTTGAATCGGTACTAGATTTAGGATAAACAAATTTTGAAAGAGATAACGATGCTAAAT 51186 Query 131340 TACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGC 131399 | || || || || || || | | || | || ||||| | ||||| ||| || Sbjct 51185 TGCACACAGCAGTCTCATCCTTTGATGAGTATTCAATTATTTCTGTGCACAGATTGCTAG 51126 Query 131400 TCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATC 131458 ||| || || | ||||| ||||||||||||| ||| ||| | || ||||| | | Sbjct 51125 ACTTAATAACACCAAGATTTTTTTGATTGCTTTTACTATT-ACAAGCATCTTTGTAAAGC 51067 Query 131459 ATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAAAGAGTTTTCGAGCA 131518 || || || || ||||| | ||||| ||| | ||| | | |||||| |||| Sbjct 51066 ATATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTATGAAAAACCATAGTTTTTGAGCT 51007 Query 131519 GACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTT 131578 | |||| ||||||| | || |||||| || ||| ||||| |||||| ||| Sbjct 51006 TCAATTTGACGTTTGTATCGCCCTTCTTTTTCATACTTTATGTACAGTTCTTCAAACTTT 50947 Query 131579 TGGCCAAACGAACTGTCC-AAATTG--GGACATTCGCTGGGACACATTAGCGACCACACG 131635 | || | || ||| ||| | || ||||| || ||||| || ||||| | Sbjct 50946 TCACCGTAACAA---TCCGAAAGTCCAGGGCATTCATGAGGGCACATAAGTGACCAGATT 50890 Query 131636 CCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCT 131695 || || ||| ||||| |||||||||||||| || | |||||| || || || ||||| Sbjct 50889 CCATTACTTTCTACTCGTTTCATAAACAAATCTGGTATCCATAAGGCATAGAAAAGATCC 50830 Query 131696 CTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCC 131755 ||||| | || || |||| || ||||| | || |||||| || | || || Sbjct 50829 CTAGCACGAATATCCTCACTACCAGTATTTTTTCGAAGATCTAAAAATTCTACTATATCG 50770 Query 131756 GCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTA 131812 |||||||| || || ||||| | || | || |||| ||| || || ||||| | | Sbjct 50769 GCATGCCATGGCTCTAAATATATGGCAAATGAGCCTGGACGCTTGTTTCCACCTTGGTCA 50710 Query 131813 ACATGACGA-ACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCC 131871 || | |||| | || |||||||| || || || | || | | || || | || || Sbjct 50709 ACGTAACGAGAACA-ATTGTTGTAAACTCGTAAAAGTGGAACAATTCCATTAGAATTACC 50651 Query 131872 ATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACC 131931 ||| || | ||| || | ||| |||| || || |||| | ||||| | || Sbjct 50650 ATTCGTTCCTGCAATATATGTACCACAAGCTCGAATATTATGAATATGTAGTCCCACTCC 50591 Query 131932 TCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCT 131991 ||| | |||| ||||| | || || || | || || | | | |||||||| | ||| Sbjct 50590 ACCGGCAAATTTGGAGATCATAGCACAGTTTTTAAGTGTATCAAATATACCTTCTATGCT 50531 Query 131992 GTCCGC-GGCAATGTCGACTAAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTG 132050 || | || || | || ||||| ||| |||| || | || ||| || || Sbjct 50530 ATCGTCTTTCATTGCCAAC-AAAAAACAACTAGACATTTGAGGACGAGGTGTTCCAGCAT 50472 Query 132051 AAAACAATGTGGGGCTGGCGTGTGTAAA--AAGTTTTTTGGCCATGCACCGATACGATTG 132108 || || || || | || || ||||| || || | | ||| | ||| | || Sbjct 50471 TGAATAAGGTTGGAGTTGCATGAGTAAACCAACGTTCT--GACATATAGTTATATGTTTC 50414 Query 132109 TATAGCGGACTCGATATCGCCCAGATGTATGGTCAATGCGACCCGCATGTACATGTGTTG 132168 ||| || || || ||||| | | |||||| | || || | ||| |||| ||||| Sbjct 50413 TATTGCAGATTCAATATCATCAAAATGTATACCAACAGCAACTCTCATCAACATATGTTG 50354 Query 132169 AATGCGCTCGGCCGTTTTGCCGTCGATTTTGATCAAATAACCGTTTTCCAAAGTTTTGAA 132228 | | || | |||| || || || || || | |||| |||| | ||||| || Sbjct 50353 AGGTCTTTCCACAATTTTTCCATCTATCTTCATTAGATAAGATCTTTCAAGGGTTTTAAA 50294 Query 132229 ACCAAAATA 132237 ||||||||| Sbjct 50293 ACCAAAATA 50285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424925922160344