Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq62 136 5e-27 >seq62 Length=56742 Score = 136 bits (150), Expect = 5e-27 Identities = 925/1473 (63%), Gaps = 50/1473 (3%) Strand=Plus/Minus Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 |||||||| ||||||||| || | ||||||| || || ||||| ||||| |||| Sbjct 51726 GGTTCAAAAGCTTCATTATTGCCGAGAATTTGTGAAGTAGATGCTGTAGGCATAGGTGAA 51667 Query 110786 ATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 110845 |||||||| || || | || ||| | || || || || ||| | | ||| || Sbjct 51666 ATCAAAAGGCTATTTCTAACACCATACTTTTTTATATCTTGCTTCAACGTGTTCCAATCC 51607 Query 110846 TA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGG 110903 | | | || | || | || |||| |||| ||| ||||||| | || ||| | Sbjct 51606 CAAAGATCAG-TAGGCGTTACATTCC-ACATATCATACTGAAGAATTCCCTGGCTGATAG 51549 Query 110904 GAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCA 110963 || ||| || | |||||||| | ||| | ||| ||| |||||||| || || | Sbjct 51548 GACTACCTTCGTATGTTTCATATGGACCATATTCTTTAGCTAATTCACATGATGCTTCAA 51489 Query 110964 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 111023 | | | ||||| || |||||||| || | ||| | | || ||||| || | Sbjct 51488 GCGCACCATGATAAATTGTTTCAAATATTTGTATATTTAATTTTTTAGCTTCTTCACTGT 51429 Query 111024 CAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAG 111083 |||| | | | || | |||| |||| || | ||||| ||||| | ||||| | Sbjct 51428 CAAAAGGCATCCTTAATAATACAAATGCATCAGCTAATCCTTGTACACCAACTCCAATTG 51369 Query 111084 GTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGA 111143 | || || ||||| || || || || || ||||| || ||||| ||||| | Sbjct 51368 GCCTATGACGCATGTTTGAATTATAGGCTTCAATAATAGGATAGAAGTTTCTATCAATAA 51309 Query 111144 CTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA-- 111201 || ||||| ||| | ||| ||||| | ||||||||| ||| ||| ||| Sbjct 51308 CTTTGTTTAAATTACGAACAGCAACTTTTGTAACGGTATGAAGTTTATCAAAATGAAATA 51249 Query 111202 ----AGTGCGAGTCTCTTC----------ATTGACATACTTTGGAAGGGCGATTGATGCC 111247 ||| || || | | || ||| | |||| ||| | | ||||| Sbjct 51248 CATTAGTT-GAATCGGTACTAGATTTAGGATAAACAAATTTTGAAAGAGATAACGATGCT 51190 Query 111248 AAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTG 111307 |||||||| ||||| ||||||||||| || ||| || | |||||||| || | ||| Sbjct 51189 AAATTGCACACAGCAGTCTCATCCTTTGATGAGTATTCAATTATTTCTGTGCACAGATTG 51130 Query 111308 GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAG 111367 | |||||| || | ||| ||||| || || || | || || ||||| ||||| Sbjct 51129 CTAGACTTAATAACACCAAGATTTTTTTGATTGCTTTTACTATTACAAGCATCTTTGTAA 51070 Query 111368 AGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCG 111427 ||||| || || || || || | || | || || || ||| | | Sbjct 51069 AGCATATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTATGAAAAACCATAGTTTTTGA 51010 Query 111428 GCTGGTACAAT--GGCGTTGGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCA 111484 ||| |||| | |||| | || || || || |||||| |||| || ||||| Sbjct 51009 GCTT---CAATTTGACGTTTGTATCGCCCTTCTTTTTCATACTTTATGTACAGTTCTTCA 50953 Query 111485 AACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG-TCTGGACAGAAAAGAGACCA 111543 |||| ||||| || || || || || || || | || || | ||| ||||| Sbjct 50952 AACTTTTCACCGTAACAATCCGAAAGTCCAGG-GCATTCATGAGGGCACATAAGTGACCA 50894 Query 111544 TTGACCAC--CTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 111601 ||| ||| || || || ||||| || | ||||| ||||| | || | || Sbjct 50893 GATTCCATTACTTTCT--ACTCGTTTCATAAACAAATCTGGTATCCATAAGGCATAGAAA 50836 Query 111602 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATG 111661 ||||| ||| ||| || || ||| || ||| | || | || || | Sbjct 50835 AGATCCCTAGCACGAATATCCTCACTACCAGTATTTTTTCGAAGATCTAAAAATTCTACT 50776 Query 111662 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCA 111715 ||||| || ||||||||||| | ||| | || | || || | ||||| ||| Sbjct 50775 ATATCGGCATGCCATGGCTCTAAATATATGGCAAATGAGCC---TGGACGCTTGTTTCCA 50719 Query 111716 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 111775 |||| | || || || | ||| | || || | | ||||| ||| |||| Sbjct 50718 CCTTGGTCAACGTAACGAGAACAATTGTTGTAAACTCGTAAAAGTGGAACAATTCCATTA 50659 Query 111776 GATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCA-T 111834 || | |||||| || || |||| | | |||| | || ||| || || | | Sbjct 50658 GAATTACCATTCGTTCCTGCAATATATGTACCACAAGCTCGAATATTATGAATATGTAGT 50599 Query 111835 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 111894 |||| | || || || | || ||||| ||||| | |||| || || | ||||| Sbjct 50598 CCCACT-CCACCGGCAAATTTGGAGATCATAGCACAGTTTTTAAGTGTATCAAATATACC 50540 Query 111895 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 111954 | || || || || | || | | || ||||| ||||| || || | ||||| Sbjct 50539 TTCTATGCTATCGTCTTTCATTGCCAACAAAAAACAACTAGACATTTGAGGACGAGGTGT 50480 Query 111955 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTA 112014 ||||||||||| | |||||| ||||| ||| | ||| || || ||||| | || || Sbjct 50479 TCCAGCATTGAATAAGGTTGGAGTTGCATGAGTAAACCAACGTTCTGACATATAGTTATA 50420 Query 112015 TGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACAT 112074 ||| || | |||| ||||| || || || || || | || || | ||| ||||| Sbjct 50419 TGTTTCTATTGCAGATTCAATATCATCAAAATGTATACCAACAGCAACTCTCATCAACAT 50360 Query 112075 GTACTGTGGGGTTTCCATGAGGATGCCATCGAGC--CGTTGAAGAT-AGCTCTTCTCAAG 112131 | || || |||||| | | ||||| | | | || |||| || |||| ||||| Sbjct 50359 ATGTTGAGGTCTTTCCACAATTTTTCCATCTATCTTCATT--AGATAAGATCTT-TCAAG 50303 Query 112132 GGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 |||||| | |||||| || | |||||||||| Sbjct 50302 GGTTTTAAAACCAAAATAGGAATAATCATAGTC 50270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628019148895200