Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq62 167 3e-36 >seq62 Length=56742 Score = 167 bits (184), Expect = 3e-36 Identities = 948/1496 (63%), Gaps = 52/1496 (3%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTCAACG 104196 |||||||| || | | ||||||||| | ||||||||||| |||| || |||| || | Sbjct 50267 AGAGACTATGATTATTCCTATTTTGGTTTTAAAACCCTTGA-AAGATCTTATCT--AATG 50323 Query 104197 --GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGT 104254 | | ||||| | |||||| || || | ||||| ||| | || || | ||| Sbjct 50324 AAGATAGATGGAAAAATTGTGGAAAGACCTCAACATATGTTGATGAGAGTTGCTGTTGGT 50383 Query 104255 ATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG 104314 || ||| || || ||||| |||| | || ||||| || | ||||| || || | Sbjct 50384 ATACATTTTGATGATATTGAATCTGCAATAGAAACATATAACTATATGTCAGAACGTTGG 50443 Query 104315 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGT 104374 || | ||| ||||| |||||| | ||||||||||| ||||| | || |||||||| ||| Sbjct 50444 TTTACTCATGCAACTCCAACCTTATTCAATGCTGGAACACCTCGTCCTCAAATGTCTAGT 50503 Query 104375 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 104434 || || | | || | || || || || | ||||| | || || |||| | Sbjct 50504 TGTTTTTTGTTGGCAATGAAAGACGATAGCATAGAAGGTATATTTGATACACTTAAAAAC 50563 Query 104435 TGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGA-TGCACATCCATGATGTGAGAGC 104493 ||||| ||||| || | || || || | ||||| | || || ||| || | |||| Sbjct 50564 TGTGCTATGATCTCCAAATTTGCCGGTGG-AGTGGGACTACATATTCATAATATTCGAGC 50622 Query 104494 CAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCG 104553 | | |||| || || |||||| | || |||| ||| ||||| | | || Sbjct 50623 TTGTGGTACATATATTGCAGGAACGAATGGTAATTCTAATGGAATTGTTCCACTTTTACG 50682 Query 104554 CGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATC 104607 || | ||| | || || || | |||| ||| ||||| | || || Sbjct 50683 AGTTTACAACAATTGTTCTCGTTACGTTGACCAAGGTGGAAACAAGCGTCCA---GGCTC 50739 Query 104608 TATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCT 104667 | || | ||| | ||||||||||| || ||||| | || || | || | || Sbjct 50740 ATTTGCCATATATTTAGAGCCATGGCATGCCGATATAGTAGAATTTTTAGATCTTCGAAA 50799 Query 104668 CAACCAAGGTGACGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAG 104726 || ||| ||||| | |||| | ||||| |||| || | ||||| |||| Sbjct 50800 AAATACTGGTAGTGAGGATATTC-GTGCTAGGGATCTTTTCTATGCCTTATGGATACCAG 50858 Query 104727 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CAAG 104785 || | || ||||| |||| || | ||| | ||||| || | || || | || Sbjct 50859 ATTTGTTTATGAAACGAGTAGAAAGTAATGGAATCTGGTCACTTATGTGCCCTCATGAAT 50918 Query 104786 GCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG 104845 || ||||| || || ||| ||||| ||||||||| || |||| |||||| || Sbjct 50919 GC-CCTGGACTTTCGGATTGTTACGGTGAAAAGTTTGAAGAACTGTACATAAAGTATGAA 50977 Query 104846 GAAGAAGGTCG-GGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAA 104904 ||||||| || | | | | || |||| | | ||| || || | Sbjct 50978 AAAGAAGGGCGATACAAACGTCAAATTG-AAGCTCAAAAACTATGGTTTTTCATACTAGA 51036 Query 104905 GTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAG 104964 |||||| || |||||| ||| || |||||||||||||| || ||||| || || Sbjct 51037 AGCTCAAATTGAAACTGGTCAACCTTATATGCTTTACAAAGATGCTTGTAATAGTAAAAG 51096 Query 104965 TAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATT 105024 |||||||| ||| | ||||| || ||| | |||||| || |||||||| | |||| Sbjct 51097 CAATCAAAAAAATCTTGGTGTTATTAAGTCTAGCAATCTGTGCACAGAAATAATTGAATA 51156 Query 105025 TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 105084 || || |||||||| |||||||| || | ||||| | |||| | || | ||| Sbjct 51157 CTCATCAAAGGATGAGACTGCTGTGTGCAATTTAGCATCGTTATCTCTTTCAAAATTTGT 51216 Query 105085 GGATCC-------AG--------AGACAAAGACATTTGATTATGAAAAACTCCACGAAGT 105129 |||| || || || |||| ||| ||| ||||| || || Sbjct 51217 TTATCCTAAATCTAGTACCGATTCAACTAATGTATTTCATTTTGATAAACTTCATACCGT 51276 Query 105130 TACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGA 105189 ||| ||| || || |||||| ||||||||||||||| || || || || Sbjct 51277 TACAAAAGTTGCTGTTCGTAATTTAAACAAAGTTATTGATAGAAACTTCTATCCTATTAT 51336 Query 105190 GACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGC 105249 || ||| || || ||| | || | |||||||| | ||||| || || | || Sbjct 51337 TGAAGCCTATAATTCAAACATGCGTCATAGGCCAATTGGAGTTGGTGTACAAGGATTAGC 51396 Query 105250 GGATGTATT--CATTCTT--TGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCA 105305 |||| ||| ||| || | || | ||||| || ||||| || || | | Sbjct 51397 TGATGCATTTGTATTATTAAGGATGC----CTTTTGACAGTGAAGAAGCTAAAAAATTAA 51452 Query 105306 ATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAG 105365 || | |||||||| || || ||||| | || ||||| || | || || || Sbjct 51453 ATATACAAATATTTGAAACAATTTATCATGGTGCGCTTGAAGCATCATGTGAATTAGCTA 51512 Query 105366 AGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC-AGCTTCACAAGGGGTGCTTCAA 105424 | | |||||||||||||||| | || ||| ||| | | | || || | ||||| Sbjct 51513 AAGAATATGGTCCATATGAAACATACGAAGGTAGTCCTATCAGC-CAGGGAATTCTTCAG 51571 Query 105425 TTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTGGGAAGCTCTCAAGGAAC 105482 | |||||||| |||| || | || | || || | || ||| | | | ||| || Sbjct 51572 TATGATATGT-GGAATGTAACGCCTA-CTGATCTTTGGGATTGGAACACGTTGAAGCAAG 51629 Query 105483 GCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCA 105542 || || || | ||| || | || || || | || | || ||||| ||||| || | Sbjct 51630 ATATAAAAAAGTATGGTGTTAGAAATAGCCTTTTGATTTCACCTATGCCTACAGCATCTA 51689 Query 105543 CCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 105598 | ||||||| | || ||||||||| |||||||| | |||| || || ||| Sbjct 51690 CTTCACAAATTCTCGGCAATAATGAAGCTTTTGAACCTTTTACGAGCAATATTTAT 51745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583248865025880