Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq630 118 7e-22 seq1466 116 3e-21 seq1258 116 3e-21 seq1155 116 3e-21 seq1253 91.5 1e-13 >seq630 Length=36350 Score = 118 bits (130), Expect = 7e-22 Identities = 155/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| ||||||| || || |||||||| || || || ||||| || | | Sbjct 225 AATGCAGATTTTTATTAAAACACTAACTGGAAAAACTATTACACTTGAAGTGGATCCTTC 166 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| ||||| || || ||||| |||||| |||| |||||||| Sbjct 165 TGACACTATTGAAAATGTAAAATCTAAGATCCAAGACAAGGAAGGTATACCTCCAGATCA 106 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| | || || ||||| || |||||| ||||||| | | | | |||| | || ||| Sbjct 105 ACAAAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTTTCG--GACTAC 48 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820 || | ||||| || ||||| | ||| | ||| Sbjct 47 AATGTTCAAAAGGAATCCACCCTCCATCTTGTT 15 >seq1466 Length=125466 Score = 116 bits (128), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| | ||||| | || |||||||| || ||||| ||||||||| | | Sbjct 71451 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 71510 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| | ||| |||||| |||||||||||| | || ||||||||| Sbjct 71511 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 71570 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATTACA 23788 ||| | | ||||| || || || ||||| ||||| | | |||||| ||||| | Sbjct 71571 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTT--CAGATTATA 71628 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 | | ||||| || || ||| | ||||| || |||| | || ||||| |||| Sbjct 71629 ATGTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGTATCA 71682 >seq1258 Length=100613 Score = 116 bits (128), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| | ||||| | || |||||||| || ||||| ||||||||| | | Sbjct 40210 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 40269 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| | ||| |||||| |||||||||||| | || ||||||||| Sbjct 40270 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 40329 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATTACA 23788 ||| | | ||||| || || || ||||| ||||| | | |||||| ||||| | Sbjct 40330 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTT--CAGATTATA 40387 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 | | ||||| || || ||| | ||||| || |||| | || ||||| |||| Sbjct 40388 ATGTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGTATCA 40441 >seq1155 Length=100669 Score = 116 bits (128), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| | ||||| | || |||||||| || ||||| ||||||||| | | Sbjct 60460 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 60401 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| | ||| |||||| |||||||||||| | || ||||||||| Sbjct 60400 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 60341 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATTACA 23788 ||| | | ||||| || || || ||||| ||||| | | |||||| ||||| | Sbjct 60340 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTT--CAGATTATA 60283 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 | | ||||| || || ||| | ||||| || |||| | || ||||| |||| Sbjct 60282 ATGTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGTATCA 60229 >seq1253 Length=11614 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || |||||||| || || || ||||| || | | |||||| |||||| ||||| Sbjct 11614 ACTGGAAAAACTATTACACTTGAAGTGGATCCTTCTGACACTATTGAAAACGTAAAATCT 11555 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || || ||||| |||||| |||| ||||||||||| | || || ||||| || ||| Sbjct 11554 AAGATCCAAGACAAGGAAGGTATACCTCCAGATCAACAAAGATTGATTTTTGCTGGAAAA 11495 Query 23755 CAACTGGAAGACGAACG--CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTAC 23812 ||| ||||||| | | | | |||| | || ||||| | ||||| || ||||| | | Sbjct 11494 CAATTGGAAGATGGAAGAACCCTTTCG--GACTACAATGTTCAAAAGGAATCCACCCTCC 11437 Query 23813 ATTTAGTT 23820 || | ||| Sbjct 11436 ATCTTGTT 11429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338002856391596