Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq630 132 1e-25 seq1466 131 4e-25 seq1258 131 4e-25 seq1155 131 4e-25 seq1253 118 3e-21 seq1296 105 2e-17 >seq630 Length=36350 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||| |||||||| ||||| |||||||| || | | ||||| |||||| Sbjct 13 AGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGGGTTCTTCCATCT 72 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || ||||| || || | || |||||| || || || ||||||||||||||| Sbjct 73 TCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTATACCTTCCTTGTCT 132 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || ||| ||| || ||||| || | ||||| || | || || || Sbjct 133 TGGATCTTAGATTTTACATTTTCAATAGTGTCAGAAGGATCCACTTCAAGTGTAATAGTT 192 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||||| || || | |||||| Sbjct 193 TTTCCAGTTAGTGTTTTAATAAAAATCTGCATT 225 >seq1466 Length=125466 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||| || || | || || || ||||| ||||| ||||| ||||| | | || Sbjct 71672 ACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGT 71613 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| || ||||| |||||||| || |||| ||||| || || |||||||| Sbjct 71612 TCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACC 71553 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| || || || ||| ||| || || || || | || || || | Sbjct 71552 TTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAG 71493 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || || |||||||| || | ||||| Sbjct 71492 AGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 71451 >seq1258 Length=100613 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||| || || | || || || ||||| ||||| ||||| ||||| | | || Sbjct 40431 ACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGT 40372 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| || ||||| |||||||| || |||| ||||| || || |||||||| Sbjct 40371 TCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACC 40312 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| || || || ||| ||| || || || || | || || || | Sbjct 40311 TTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAG 40252 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || || |||||||| || | ||||| Sbjct 40251 AGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 40210 >seq1155 Length=100669 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||| || || | || || || ||||| ||||| ||||| ||||| | | || Sbjct 60239 ACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGT 60298 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| || ||||| |||||||| || |||| ||||| || || |||||||| Sbjct 60299 TCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACC 60358 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| || || || ||| ||| || || || || | || || || | Sbjct 60359 TTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAG 60418 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || || |||||||| || | ||||| Sbjct 60419 AGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 60460 >seq1253 Length=11614 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||| |||||||| ||||| |||||||| || | | ||||| |||||| Sbjct 11427 AGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGGGTTCTTCCATCT 11486 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || ||||| || || | || |||||| || || || ||||||||||||||| Sbjct 11487 TCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTATACCTTCCTTGTCT 11546 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || ||| || ||||| || | ||||| || | || || || Sbjct 11547 TGGATCTTAGATTTTACGTTTTCAATAGTGTCAGAAGGATCCACTTCAAGTGTAATAGTT 11606 Query 225682 TTGCCCGT 225689 || || || Sbjct 11607 TTTCCAGT 11614 >seq1296 Length=34217 Score = 105 bits (116), Expect = 2e-17 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 ||||| || |||||||||||||| |||||||| || ||||||||||| || ||||||||| Sbjct 14540 AATATCTGTCCATCAGTAATAGATATAACATTGGTGGGGATATAAGCTGATACATCACCT 14599 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACC 4571 ||||| ||||| | | ||||| ||||| | ||| ||||| Sbjct 14600 GCTTGAGTTTCAATTATTGGTAAAGCTGTCAATGAACCACC 14640 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 5019 CTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGT 5078 || ||||| | || || || ||||||||| ||| || |||||||||||||| |||||| Sbjct 14868 CTACAATATTTAGCTCCTTATTCAGGTTGTGCTATGGGTGAATATTTTAGAGACAATGGT 14809 Query 5079 AAACATGCTTTAATCATCTACGATGAT 5105 ||||||||| | ||||| || |||||| Sbjct 14808 AAACATGCTCTTATCATATATGATGAT 14782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192506187776078