Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1531 161 8e-35 seq1530 161 8e-35 >seq1531 Length=18023 Score = 161 bits (178), Expect = 8e-35 Identities = 152/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 4800 TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859 ||||| ||| |||| |||||| || || |||| || |||||||||||||||||| ||| Sbjct 8594 TTTTCTGCTGGTTCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATA 8653 Query 4860 TTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919 ||||| |||||||| |||||||| |||||| ||||||| || | ||| ||||| || Sbjct 8654 TTTTCAATAGCAATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTT 8713 Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 ||| | ||| || | |||||| || || ||||| ||||| || ||||| || ||||| Sbjct 8714 GCAAAACATTCAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAAT 8773 Query 4980 ACATGAGATATAAA 4993 | ||| |||||||| Sbjct 8774 ATATGGGATATAAA 8787 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 ||| ||||||| || |||||||||||||||||||||| | ||| | || || || Sbjct 8050 AGCAACAAGCAGACGATCAGCTACAAATTCTATATACTTACACATATCAGCACAATTCAT 8109 Query 4427 TCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 |||||| | ||||||||| || | | ||||| |||| ||| ||| || ||||| Sbjct 8110 TCCAATAAGATTCACAGGTAAAGCTTCACTGAAAAATTCTTTTTCAATATCAACTGCTTC 8169 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA 4546 ||||| || | ||| | | ||| |||||||| | | || ||| ||||| ||| Sbjct 8170 AGTGATAATTTGTTTGACTAAATCAAATGATGGTTTGTATTTTATGTAGTTAAACATTAA 8229 Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTA 4595 || ||||||||| || | ||||| ||||| || || ||||| ||| Sbjct 8230 GCAAGCAAAATCAGTGTGAAGTCCTTCATCTCTACTGATAAGTTCATTA 8278 >seq1530 Length=18023 Score = 161 bits (178), Expect = 8e-35 Identities = 152/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 4800 TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859 ||||| ||| |||| |||||| || || |||| || |||||||||||||||||| ||| Sbjct 8594 TTTTCTGCTGGTTCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATA 8653 Query 4860 TTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919 ||||| |||||||| |||||||| |||||| ||||||| || | ||| ||||| || Sbjct 8654 TTTTCAATAGCAATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTT 8713 Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 ||| | ||| || | |||||| || || ||||| ||||| || ||||| || ||||| Sbjct 8714 GCAAAACATTCAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAAT 8773 Query 4980 ACATGAGATATAAA 4993 | ||| |||||||| Sbjct 8774 ATATGGGATATAAA 8787 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 ||| ||||||| || |||||||||||||||||||||| | ||| | || || || Sbjct 8050 AGCAACAAGCAGACGATCAGCTACAAATTCTATATACTTACACATATCAGCACAATTCAT 8109 Query 4427 TCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 |||||| | ||||||||| || | | ||||| |||| ||| ||| || ||||| Sbjct 8110 TCCAATAAGATTCACAGGTAAAGCTTCACTGAAAAATTCTTTTTCAATATCAACTGCTTC 8169 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA 4546 ||||| || | ||| | | ||| |||||||| | | || ||| ||||| ||| Sbjct 8170 AGTGATAATTTGTTTGACTAAATCAAATGATGGTTTGTATTTTATGTAGTTAAACATTAA 8229 Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTA 4595 || ||||||||| || | ||||| ||||| || || ||||| ||| Sbjct 8230 GCAAGCAAAATCAGTGTGAAGTCCTTCATCTCTACTGATAAGTTCATTA 8278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427041079960121