Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq62 504 1e-137 seq1531 125 1e-23 seq1530 125 1e-23 >seq62 Length=56742 Score = 504 bits (558), Expect = 1e-137 Identities = 1095/1622 (68%), Gaps = 45/1622 (3%) Strand=Plus/Minus Query 77052 ATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGA 77111 |||| | ||| ||||||||||||||||| | || | ||| | || || | | Sbjct 51849 ATAAGTTGATTTTTTATATCATCATTCCAAATATTTAAATTAACCAAATCGCTTAGTAAA 51790 Query 77112 TGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTA 77171 | || |||| ||||||||| || || || || | | || |||||||| || ||| Sbjct 51789 TACTTGTTTACTACTTGAAATTCACCTGATAAAACACGTCTAGAATAAATATTGCTCGTA 51730 Query 77172 TATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGT 77231 | ||||| | || |||||| || || | |||||| | |||||| || || ||||||||| Sbjct 51729 AAAGGTTCAAAAGCTTCATTATTGCCGAGAATTTGTGAAGTAGATGCTGTAGGCATAGGT 51670 Query 77232 GCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTT--TTAGATAT-TTC 77288 | | ||| | |||||||| | ||||| || | || ||||| || | | ||| Sbjct 51669 GAAATCAAAAGGCTATTTCTAACACCATACTTTTTTAT---ATCTTGCTTCAACGTGTTC 51613 Query 77289 CAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTA 77348 |||||||||||||| | ||| |||| ||| | ||| || || |||||||| | || Sbjct 51612 CAATCCCAAAGATCAGTAGGCGTTACATTCCACATATCATACTGAAGAATTCCCTGGCTG 51553 Query 77349 GCATATGAT--CCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCG 77406 ||| || || | ||||||||||| || || | | || ||||| |||||| | Sbjct 51552 --ATAGGACTACCTTCGTATGTTTCATATGGACCATATTCTTTAGCTAATTCACATGATG 51495 Query 77407 CTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAA 77466 |||| | || || | |||||||||||| || || | |||| | | || ||||| Sbjct 51494 CTTCAAGCGCACCATGATAAATTGTTTCAAATATTTGTATATTTAATTTTTTAGCTTCTT 51435 Query 77467 TACTATCAAACGG-ATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATA 77525 ||| ||||| || || | ||| | | ||| ||||| |||||||| || || |||| Sbjct 51434 CACTGTCAAAAGGCATCCT-TAATAATACAAATGCATCAGCTAATCCTTGTACACCAACT 51376 Query 77526 CCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATG 77585 ||||| || ||||| | | | || ||| | | ||||| ||||||||| | || | Sbjct 51375 CCAATTGGCCTATGACGCATGTTTGAATTATAGGCTTCAATAATAGGATAGAAGTTTCTA 51316 Query 77586 TCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAA 77645 || |||| ||| || | ||| | |||| | ||||| ||| | |||||| |||| Sbjct 51315 TCAATAACTTTGTTTAAATTACGAACAGCAACTTTTGTAACGGTATGAAGTTTATCAAAA 51256 Query 77646 TCAAATC------TTCCATCTATA-----------ACAAACA--TGTTCAAAGCTATA-- 77684 | |||| || ||| || | ||||| | || |||| ||| Sbjct 51255 TGAAATACATTAGTTGAATCGGTACTAGATTTAGGATAAACAAATTTTGAAAGAGATAAC 51196 Query 77685 GATGCTAGATTACAAACTGCTACCTCATTAGCGTTG--GCATATTGTATTATCTCGGTAC 77742 ||||||| ||| || || || ||||| | ||| | |||| ||||| || || | Sbjct 51195 GATGCTAAATTGCACACAGCAGTCTCATC--CTTTGATGAGTATTCAATTATTTCTGTGC 51138 Query 77743 ATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGT 77802 | ||||| ||| | || ||| || ||||||| ||| ||||| || |||| || | | Sbjct 51137 ACAGATTGCTAGACTTAATAACACCAAGATTTTTTTGATTGCTTTTACTATTACAAGCAT 51078 Query 77803 CCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGA 77862 | || ||||| ||| | || || |||||||| || | ||| | || | ||| | Sbjct 51077 CTTTGTAAAGCATATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTATGAAAAACCATA 51018 Query 77863 CGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCC 77922 | ||||| || | ||||||||||| ||| ||||||| | | || || Sbjct 51017 GTTTTTGAGCTTCAATTTGACGTTTGTATCGCCCTTCTTTTTCATACTTTATGTACAGTT 50958 Query 77923 GTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATG 77982 |||||| | || || || ||| | |||||||||||||| |||||||| | || Sbjct 50957 CTTCAAACTTTTCACCGTAACAATCCGAAAGTCCAGGGCATTCATGAGGGCACATAAGTG 50898 Query 77983 ACCAGTCACCAT--CTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 ||||| |||| ||| || |||||||||||||| | ||| |||||||||| ||| Sbjct 50897 ACCAGATTCCATTACTTTCT--ACTCGTTTCATAAACAAATCTGGTATCCATAAGGCATA 50840 Query 78041 AAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100 || ||||| | | | | || ||| | || ||||| ||| |||||| | ||| || Sbjct 50839 GAAAAGATCCCTAGCACGAATATCCTCACTACCAGTATTTTTTCGAAGATCTAAAAATTC 50780 Query 78101 CATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACC 78160 | ||||| | ||||||||| |||| |||||| || | || || || || || || Sbjct 50779 TACTATATCGGCATGCCATGGCTCTAAATATATGGCAAATGAGCCTGGACGCTTGTTTCC 50720 Query 78161 TCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 78220 || || || | || | | || || ||||||| || | ||||| ||| || || Sbjct 50719 ACCTTGGTCAACGTAACGAGAACAATTGTTGTAAACTCGTAAAAGTGGAACAATTCCATT 50660 Query 78221 AGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT 78280 ||| | ||||| ||||| | |||||| | |||| || ||||||||| ||| || Sbjct 50659 AGAATTACCATTCGTTCCTGCAATATATGTACCACAAGCTCGAATATTATGAATATGTAG 50600 Query 78281 CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACC 78340 || | ||| || || | || || || | ||| || ||| | |||||| | ||||| Sbjct 50599 TCCCACTCCACCGGCAAATTTGGAGATCATAGCACAGTTTTTAAGTGTATCAAATATACC 50540 Query 78341 CTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAG 78399 ||||| || || || |||| | || || |||||| |||||||||||| || || | Sbjct 50539 TTCTATGCTATCGTCTTTCATTGCCAACAA-AAAACAACTAGACATTTGAGGACGAGGTG 50481 Query 78400 TTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAG-TAGATTG 78458 |||| ||||| ||||| || |||| |||||| |||||||| ||| || | ||| || Sbjct 50480 TTCCAGCATTGAATAAGGTTGGAGTTGCATGAGTAAACCAACGTTCTGACATATAG-TTA 50422 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||| || || ||||| || || ||| || || || || || | ||||||| Sbjct 50421 TATGTTTCTATTGCAGATTCAATATCATCAAAATGTATACCAACAGCAACTCTCATCAAC 50362 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 ||||| ||||||||||| || | || || ||| |||| | || ||| |||| | Sbjct 50361 ATATGTTGAGGTCTTTCCACAATTTTTCCATCTATCTTCATTAGATAAGATCTTTCAAGG 50302 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGT 78638 |||||||||||||||||| || | ||||||| | |||| ||| | ||||||| | Sbjct 50301 GTTTTAAAACCAAAATAGGAATAATCATAGTCTCTATGATAAACTATAGCTGAATTTAAT 50242 Query 78639 TT 78640 || Sbjct 50241 TT 50240 Score = 132 bits (146), Expect = 7e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 78757 TTGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGAT 78816 ||||||| ||||| |||||||||||| | ||||| ||||||| |||||||||||| |||| Sbjct 49460 TTGTTTCTTTGTGGAGATTAGATACAACAATTCTAGCAGCTAAAATAGCATAATCTGGAT 49401 Query 78817 GTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGA 78876 || ||||||| | || || ||||| || ||||| |||||| || |||||||| | Sbjct 49400 GTCGTGTAGTCATTGAAGCAGCAATTTCCGCAGCTAAGTTATCTAGTTCAATAGTTGTTA 49341 Query 78877 CCCCATTATATAGTCCTTGAATAACTTT 78904 | ||| ||||| ||| | ||||||||| Sbjct 49340 CTCCAGCATATATTCCATTAATAACTTT 49313 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 76806 GGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGC 76865 || |||| ||||| ||||||||| |||||||| ||||| ||||||| || || ||| Sbjct 52145 GGCTTTGAACGTAAATAGTACATTCCAGTTTTGAGACCTTTCTTCCATCCATAAAAGTGC 52086 Query 76866 ATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGA 76925 | |||||||| | | | || || || ||| ||||| | |||||||||||| Sbjct 52085 AAACTTGTCAGACGACCAAAGTTTGGCTCTGCCATAAATATATTGAGAGACTGACTTTGA 52026 Query 76926 TCGATGAAAGCTCCTCTATCAGCCGCCAT 76954 || || || || |||| |||||| ||||| Sbjct 52025 TCAATAAAGGCACCTCGATCAGCTGCCAT 51997 >seq1531 Length=18023 Score = 125 bits (138), Expect = 1e-23 Identities = 185/260 (71%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 48328 GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 48387 ||||||| | ||||| || ||||| || || | | ||| ||||| || || Sbjct 8532 GTGCCCATTGCGCCTTTTTTCTTACAGTTGGTATATAGTGAAGAGCTTTAAAAAGTGTGT 8591 Query 48388 ttttttCATTGCTA--TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTG 48445 ||||| |||| ||||||| || || || ||||| | ||||||||||| || || Sbjct 8592 CCTTTTC--TGCTGGTTCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATG 8649 Query 48446 AATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||||||||||| || || |||||||| ||||| |||| || || | ||||| || Sbjct 8650 AATATTTTCAATAGCAATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTC 8709 Query 48506 CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 | ||| | |||| ||| || ||||| || || ||||||||||||||||| ||||| Sbjct 8710 ATTTGCAAAACATTCAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGC 8769 Query 48566 TAATACATGTTTAATAAAAT 48585 |||| ||| ||||||| Sbjct 8770 CAATATATGGGATATAAAAT 8789 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 48603 AGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGAT 48662 || ||||||||||| | ||| | |||| |||||||| ||| |||||||||||||| Sbjct 8857 AGCTTATTCCAGTCGGCTAAGTCTCTCGATAAGTCTACTTCCTCAACTGTCCAAAATGAT 8916 Query 48663 GCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAAT 48722 ||| | ||| |||||||| | ||| |||||| | || | ||| || | |||| || Sbjct 8917 GCCACAGCTCGCTTATACATTTCCCAGATATCATAGCGTTCCAATGGAAACACAACATAT 8976 Query 48723 CTATTTGGAT 48732 ||||| |||| Sbjct 8977 CTATTGGGAT 8986 >seq1530 Length=18023 Score = 125 bits (138), Expect = 1e-23 Identities = 185/260 (71%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 48328 GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 48387 ||||||| | ||||| || ||||| || || | | ||| ||||| || || Sbjct 8532 GTGCCCATTGCGCCTTTTTTCTTACAGTTGGTATATAGTGAAGAGCTTTAAAAAGTGTGT 8591 Query 48388 ttttttCATTGCTA--TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTG 48445 ||||| |||| ||||||| || || || ||||| | ||||||||||| || || Sbjct 8592 CCTTTTC--TGCTGGTTCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATG 8649 Query 48446 AATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||||||||||| || || |||||||| ||||| |||| || || | ||||| || Sbjct 8650 AATATTTTCAATAGCAATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTC 8709 Query 48506 CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 | ||| | |||| ||| || ||||| || || ||||||||||||||||| ||||| Sbjct 8710 ATTTGCAAAACATTCAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGC 8769 Query 48566 TAATACATGTTTAATAAAAT 48585 |||| ||| ||||||| Sbjct 8770 CAATATATGGGATATAAAAT 8789 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 48603 AGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGAT 48662 || ||||||||||| | ||| | |||| |||||||| ||| |||||||||||||| Sbjct 8857 AGCTTATTCCAGTCGGCTAAGTCTCTCGATAAGTCTACTTCCTCAACTGTCCAAAATGAT 8916 Query 48663 GCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAAT 48722 ||| | ||| |||||||| | ||| |||||| | || | ||| || | |||| || Sbjct 8917 GCCACAGCTCGCTTATACATTTCCCAGATATCATAGCGTTCCAATGGAAACACAACATAT 8976 Query 48723 CTATTTGGAT 48732 ||||| |||| Sbjct 8977 CTATTGGGAT 8986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694654585339680