Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq62 518 5e-142 seq1531 149 9e-31 seq1530 149 9e-31 >seq62 Length=56742 Score = 518 bits (574), Expect = 5e-142 Identities = 1060/1558 (68%), Gaps = 49/1558 (3%) Strand=Plus/Minus Query 75713 TTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGT 75772 || || | ||||||||| || || || || | || || |||||||| || ||| | ||| Sbjct 51783 TTTACTACTTGAAATTCACCTGATAAAACACGTCTAGAATAAATATTGCTCGTAAAAGGT 51724 Query 75773 TCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACC 75832 || | || |||||| || || | |||||| | ||| || || || |||||||||| | | Sbjct 51723 TCAAAAGCTTCATTATTGCCGAGAATTTGTGAAGTAGATGCTGTAGGCATAGGTGAAATC 51664 Query 75833 AATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTT--TTAGATAT-TTCCAATCC 75889 || | |||||||| | ||||| || | || ||||| || | | ||||||||| Sbjct 51663 AAAAGGCTATTTCTAACACCATACTTTTTTAT---ATCTTGCTTCAACGTGTTCCAATCC 51607 Query 75890 CAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATAT 75949 |||||||| | || |||| ||| | ||| || || |||||||| | ||| ||| Sbjct 51606 CAAAGATCAGTAGGCGTTACATTCCACATATCATACTGAAGAATTCCCTGGCTG--ATAG 51549 Query 75950 GAT--CCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTA 76007 || || | |||||||| || | || | | || ||||| ||| || || || | Sbjct 51548 GACTACCTTCGTATGTTTCATATGGACCATATTCTTTAGCTAATTCACATGATGCTTCAA 51489 Query 76008 ACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTAT 76067 |||||| | |||||||||||| || || | |||| | | || ||||| ||| | Sbjct 51488 GCGCACCATGATAAATTGTTTCAAATATTTGTATATTTAATTTTTTAGCTTCTTCACTGT 51429 Query 76068 CAAAAGG-ATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATA 76126 ||||||| || | ||| | | ||||||||| |||| ||| || || |||| ||||| Sbjct 51428 CAAAAGGCATCCT-TAATAATACAAATGCATCAGCTAATCCTTGTACACCAACTCCAATT 51370 Query 76127 GGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATA 76186 || ||||| | | | || ||| | | ||||| |||||| || | || |||| ||| Sbjct 51369 GGCCTATGACGCATGTTTGAATTATAGGCTTCAATAATAGGATAGAAGTTTCTATCAATA 51310 Query 76187 ATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT 76246 | ||| || | ||| | ||| | ||||| ||| | ||||| ||||| |||| Sbjct 51309 ACTTTGTTTAAATTACGAACAGCAACTTTTGTAACGGTATGAAGTTTATCAAAATGAAAT 51250 Query 76247 T------TTCCATC-----------TATCACAAACATATT----AAGAGCTATAGATGCT 76285 || ||| || | ||||| ||| ||||| || |||||| Sbjct 51249 ACATTAGTTGAATCGGTACTAGATTTAGGATAAACAAATTTTGAAAGAGATAACGATGCT 51190 Query 76286 AGATTACAAACGGCTACCTCATTAGCATTG--GCATATTGTATTATCTCCGTGCATAGAT 76343 | ||| || || || ||||| | ||| | |||| ||||| || ||||| |||| Sbjct 51189 AAATTGCACACAGCAGTCTCATC--CTTTGATGAGTATTCAATTATTTCTGTGCACAGAT 51132 Query 76344 TACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTAT 76403 | ||| |||| ||| |||||||||| ||| ||||| || | ||||| | || || | Sbjct 51131 TGCTAGACTTAATAACACCAAGATTTTTTTGATTGCTTTTACTATTACAAGCATCTTTGT 51072 Query 76404 AAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTC 76463 |||| | | | || ||||||||||| || | ||| | || | ||| | | Sbjct 51071 AAAGCATATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTATGAAAAACCATAGTTTTT 51012 Query 76464 TAGCTTTTATTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAA 76523 ||||| ||| | |||||||||| ||| ||||||| | | | || | ||||| Sbjct 51011 GAGCTTCAATTTGACGTTTGTATCGCCCTTCTTTTTCATACTTTATGTACAGTTCTTCAA 50952 Query 76524 ATTCATCTCCCCAAACATCATCCAAA--CCAGGACATTCATTCGGACACATCAATGACCA 76581 | | || || || ||| | ||| ||||| ||||||| || ||||| | |||||| Sbjct 50951 ACTTTTCACCGTAACAATC--CGAAAGTCCAGGGCATTCATGAGGGCACATAAGTGACCA 50894 Query 76582 CTCACCAT--CTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 |||| ||| || || ||||||||||| | ||| |||||||||| ||| || Sbjct 50893 GATTCCATTACTTTCT--ACTCGTTTCATAAACAAATCTGGTATCCATAAGGCATAGAAA 50836 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 ||||| | | | | || ||| | || ||||| ||| |||||||| || || | Sbjct 50835 AGATCCCTAGCACGAATATCCTCACTACCAGTATTTTTTCGAAGATCTAAAAATTCTACT 50776 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 ||||| | ||||||||| |||| |||||| || | || || || || || || || Sbjct 50775 ATATCGGCATGCCATGGCTCTAAATATATGGCAAATGAGCCTGGACGCTTGTTTCCACCT 50716 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 || || | || | | | || || ||||||| || | ||||| ||| || ||||| Sbjct 50715 TGGTCAACGTAACGAGAACAATTGTTGTAAACTCGTAAAAGTGGAACAATTCCATTAGAA 50656 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879 ||||||| ||||| | |||||| | ||||| || ||||||||| |||| ||| || Sbjct 50655 TTACCATTCGTTCCTGCAATATATGTACCACAAGCTCGAATATTATGAATATGTAGTCCC 50596 Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939 | ||| || || | ||| ||||| | ||||||| ||| | ||| ||| | || || ||| Sbjct 50595 ACTCCACCGGCAAATTTGGAGATCATAGCACAGTTTTTAAGTGTATCAAATATACCTTCT 50536 Query 76940 ATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 || ||||| || |||| | || || |||||| |||||||||||| || || ||||| Sbjct 50535 ATGCTATCGTCTTTCATTGCCAACAA-AAAACAACTAGACATTTGAGGACGAGGTGTTCC 50477 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAG-TAGATTGTATG 77057 ||||| || || || |||| ||||||||| ||||| ||| || | ||| || |||| Sbjct 50476 AGCATTGAATAAGGTTGGAGTTGCATGAGTAAACCAACGTTCTGACATATAG-TTATATG 50418 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117 |||| || | | ||| ||||| ||| || || ||||| || | ||||||||||| Sbjct 50417 TTTCTATTGCAGATTCAATATCATCAAAATGTATACCAACAGCAACTCTCATCAACATAT 50358 Query 77118 GCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 77177 | ||||||| ||| ||| | || || ||| |||| | || ||| |||| | |||| Sbjct 50357 GTTGAGGTCTTTCCACAATTTTTCCATCTATCTTCATTAGATAAGATCTTTCAAGGGTTT 50298 Query 77178 TAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTT 77235 |||||||||||||| || | ||||||| | |||| ||| | ||||||| ||| Sbjct 50297 TAAAACCAAAATAGGAATAATCATAGTCTCTATGATAAACTATAGCTGAATTTAATTT 50240 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 77352 TTGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGAT 77411 ||||||| ||||| ||||| ||||| | ||||||||||||| ||| ||||| || |||| Sbjct 49460 TTGTTTCTTTGTGGAGATTAGATACAACAATTCTAGCAGCTAAAATAGCATAATCTGGAT 49401 Query 77412 GTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAA 77471 || ||||||| | || || ||||| || ||||| |||||| ||| ||||| || | Sbjct 49400 GTCGTGTAGTCATTGAAGCAGCAATTTCCGCAGCTAAGTTATCTAGTTCAATAGTTGTTA 49341 Query 77472 CTCCGTTATATAGCCCTTGAATAACTTT 77499 |||| ||||| || | ||||||||| Sbjct 49340 CTCCAGCATATATTCCATTAATAACTTT 49313 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 75401 GGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGC 75460 || |||| ||||| ||||||||| |||||||| ||||| ||||||| || || ||| Sbjct 52145 GGCTTTGAACGTAAATAGTACATTCCAGTTTTGAGACCTTTCTTCCATCCATAAAAGTGC 52086 Query 75461 ATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGA 75520 | ||||| || | | | || || || ||| ||||| | |||||||||||| Sbjct 52085 AAACTTGTCAGACGACCAAAGTTTGGCTCTGCCATAAATATATTGAGAGACTGACTTTGA 52026 Query 75521 TCGATGAAAGCTCCTCTATCAGCCGCCAT 75549 || || || || |||| |||||| ||||| Sbjct 52025 TCAATAAAGGCACCTCGATCAGCTGCCAT 51997 >seq1531 Length=18023 Score = 149 bits (164), Expect = 9e-31 Identities = 151/194 (78%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 ||||||| |||||| || ||||| | ||||||||||| |||||||| ||||||||||| Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC-TGTACAAAATCGTTC 47009 || |||||||| ||||| |||| || |||| ||||| || | | ||||| | ||| Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAA-CATTC 8724 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 | || || ||||| || || ||||||||||||||||| |||||||||| ||| || Sbjct 8725 AACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATAT 8784 Query 47070 AAAATATTTTTCAT 47083 ||||| | | |||| Sbjct 8785 AAAATGTCTCTCAT 8798 >seq1530 Length=18023 Score = 149 bits (164), Expect = 9e-31 Identities = 151/194 (78%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 ||||||| |||||| || ||||| | ||||||||||| |||||||| ||||||||||| Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC-TGTACAAAATCGTTC 47009 || |||||||| ||||| |||| || |||| ||||| || | | ||||| | ||| Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAA-CATTC 8724 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 | || || ||||| || || ||||||||||||||||| |||||||||| ||| || Sbjct 8725 AACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATAT 8784 Query 47070 AAAATATTTTTCAT 47083 ||||| | | |||| Sbjct 8785 AAAATGTCTCTCAT 8798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712919811579840