Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1466 107 4e-18 seq1258 107 4e-18 seq1155 107 4e-18 seq630 87.8 4e-12 >seq1466 Length=125466 Score = 107 bits (118), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || || | |||||| || || || ||||| | || ||||| | | ||||| Sbjct 71668 AGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTA 71609 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| || ||||| || ||||| || || ||||| || || | | || |||| Sbjct 71608 CCATCTTCAAGTTGCTTT--CCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTT 71551 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 | || ||||||||||| ||||||| | |||| | || || || |||||||||| Sbjct 71550 CTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAG 71491 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||||| || || | || || | || | |||||| Sbjct 71490 TAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 71451 >seq1258 Length=100613 Score = 107 bits (118), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || || | |||||| || || || ||||| | || ||||| | | ||||| Sbjct 40427 AGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTA 40368 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| || ||||| || ||||| || || ||||| || || | | || |||| Sbjct 40367 CCATCTTCAAGTTGCTTT--CCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTT 40310 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 | || ||||||||||| ||||||| | |||| | || || || |||||||||| Sbjct 40309 CTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAG 40250 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||||| || || | || || | || | |||||| Sbjct 40249 TAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 40210 >seq1155 Length=100669 Score = 107 bits (118), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || || | |||||| || || || ||||| | || ||||| | | ||||| Sbjct 60243 AGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTA 60302 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| || ||||| || ||||| || || ||||| || || | | || |||| Sbjct 60303 CCATCTTCAAGTTGCTTT--CCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTT 60360 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 | || ||||||||||| ||||||| | |||| | || || || |||||||||| Sbjct 60361 CTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAG 60420 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||||| || || | || || | || | |||||| Sbjct 60421 TAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 60460 >seq630 Length=36350 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || ||||| | ||||| || | | ||||| |||||| Sbjct 13 AGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGGGTTCTTCCATCT 72 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || || || || | || || || || | | || |||||||| ||| Sbjct 73 TCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTATACCTTCCTTGTCT 132 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||| ||| | || | |||| ||| || |||||||| ||||||||| Sbjct 133 TGGATCTTAGATTTTACATTTTCAATAGTGTCAGAAGGATCCACTTCAAGTGTAATAGTT 192 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || | || | ||||||| Sbjct 193 TTTCCAGTTAGTGTTTTAATAAAAATCTGCATT 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153796599690427