Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq1466 93.3 4e-14 seq1258 93.3 4e-14 seq1155 93.3 4e-14 >seq1466 Length=125466 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||| | ||||| || || || ||||| ||||| | ||| || |||| | Sbjct 71451 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGA-CCCATC 71509 Query 111160 -GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| || | | | || ||| |||||| ||||||||||| |||| ||||| Sbjct 71510 TGATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCA 71569 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| || || || | || || || ||| | |||||| || ||| | | |||||||| Sbjct 71570 ACAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAA 71629 Query 111279 TATACAAAAAGAATCTACACTACATTTAGT 111308 | | ||||| ||||| ||||| ||||| || Sbjct 71630 TGTTCAAAAGGAATCAACACTTCATTTGGT 71659 >seq1258 Length=100613 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||| | ||||| || || || ||||| ||||| | ||| || |||| | Sbjct 40210 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGA-CCCATC 40268 Query 111160 -GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| || | | | || ||| |||||| ||||||||||| |||| ||||| Sbjct 40269 TGATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCA 40328 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| || || || | || || || ||| | |||||| || ||| | | |||||||| Sbjct 40329 ACAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAA 40388 Query 111279 TATACAAAAAGAATCTACACTACATTTAGT 111308 | | ||||| ||||| ||||| ||||| || Sbjct 40389 TGTTCAAAAGGAATCAACACTTCATTTGGT 40418 >seq1155 Length=100669 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||| | ||||| || || || ||||| ||||| | ||| || |||| | Sbjct 60460 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGA-CCCATC 60402 Query 111160 -GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| || | | | || ||| |||||| ||||||||||| |||| ||||| Sbjct 60401 TGATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCA 60342 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| || || || | || || || ||| | |||||| || ||| | | |||||||| Sbjct 60341 ACAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAA 60282 Query 111279 TATACAAAAAGAATCTACACTACATTTAGT 111308 | | ||||| ||||| ||||| ||||| || Sbjct 60281 TGTTCAAAAGGAATCAACACTTCATTTGGT 60252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421802784471112