Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq159 105 7e-18 >seq159 Length=112901 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 || ||||| || || || ||||| |||||||| || ||||||| || ||| |||| | Sbjct 34596 TTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATAAAATGT 34655 Query 16652 TTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCT 16711 ||||| || | | || | | ||| | | ||| ||||| || | ||| |||||||| Sbjct 34656 TTTTCCTCTGGCTTCAGCTTCTCCCAGTGTCCTAAGTCTTTAGAAAGATCTACTTCTTCA 34715 Query 16712 GGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATG 16771 | |||||||| ||| |||| ||||| ||||||||||| || || | |||| ||| Sbjct 34716 GCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATATTTTATA 34775 Query 16772 GGAAATACGAC 16782 ||||| | ||| Sbjct 34776 GGAAAAATGAC 34786 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || || |||||||||||||| ||| || || | |||||||| | |||| |||||| Sbjct 33784 TCATCCCTGCTGATAAGTTCATTGCTGAATGTCAGGCCTGGCATGATACCTCTTTTCTTG 33843 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||| || || | |||||| || || || ||||| || || || || | |||||||| Sbjct 33844 AGCCAAAAGATGGAAGCAAAAGAACCAGAGAAGAAGATCCCTTCCACTGCAGCAAAAGCA 33903 Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTA-CCCATTCGGC 16404 || | || || || | | |||| ||| | ||||| | || |||| || || Sbjct 33904 ATAACTCTCTCTGCAAAGCTGGCATTTTTGGCATTGATCCA-GCGTATAGCCCAGTCAGC 33962 Query 16405 TTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAA 16443 |||| |||| |||| ||| ||||| || || || || Sbjct 33963 CTTTTTCTTTACACAAGGCATAGTTTCAATTGCATTGAA 34001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511389916035600