Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3215 98.7 8e-16 seq304 84.2 2e-11 >seq3215 Length=281622 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||||||| || |||||||| ||||| || ||| | | || Sbjct 219960 AGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCATCT 220019 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||| || || ||| | || | | |||||| || ||| | |||||| ||||| Sbjct 220020 TCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCTTTGTCT 220079 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | ||||| |||||| |||| ||| |||||| Sbjct 220080 TGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCTACCTCCAGGGTGATGGTC 220139 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | ||||||||||| || ||||| Sbjct 220140 TTGCCTGTGAGAGTTTTGACAAAGATCTGCAT 220171 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| ||| | ||||| || || |||||||| ||||| |||||| || | || || Sbjct 223033 CACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCCATCTTC 223092 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 ||||||||| || ||| |||| || | || ||||| || | || || ||||| Sbjct 223093 CAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTG 223152 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 ||||| ||||| | | | ||||| ||||| || | |||||||||||| Sbjct 223153 AATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTT 223212 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCT 21184 || || || || || ||||| || ||||| |||| ||| Sbjct 223213 CCCAGTCAAAGTCTTCACAAAAATCTGCATGTTGATTCT 223251 >seq304 Length=94255 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | | ||||| ||| | || || || || |||||||| ||||| | Sbjct 368 CCACCACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTC 427 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||||||||| || ||| |||| || | || ||||| || Sbjct 428 AGGGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGT 487 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| ||||| ||||| | | | ||||| ||||| Sbjct 488 ATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACC 547 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCT 21184 || | |||||||||||| || || || || || ||||| || ||||| |||| ||| Sbjct 548 TCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATGTTGATTCT 603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422239489732280