Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3215 122 9e-23 seq159 109 6e-19 seq304 105 7e-18 seq3547 100 3e-16 seq282 96.9 4e-15 >seq3215 Length=281622 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| ||||| ||||||||| | || || || || | Sbjct 220171 ATGCAGATCTTTGTCAAAACTCTCACAGGCAAGACCATCACCCTGGAGGTAGAGCCCTCA 220112 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | |||| || || | |||||||| ||||| ||| | || ||| Sbjct 220111 GATACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 220052 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || || ||| |||| || | |||||| | | |||||||||| Sbjct 220051 CAGCGTTTGATCTTTGCTGGGAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 219992 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| ||| |||| || ||||| ||| |||| Sbjct 219991 ATTCAGAAAGAGTCCACTCTCCATCTTGTGCTGCG 219957 Score = 109 bits (120), Expect = 6e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || | || || || ||||| ||| | || || || ||| Sbjct 223245 AACATGCAGATTTTTGTGAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTAGA-GCC 223187 Query 40747 ACC-GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | || | | | ||| | |||| || |||| ||||||||||| || || | || Sbjct 223186 ATCAGATACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAGGGGATACCACCTGA 223127 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||||| || || | || || ||||||||||| || | |||||||| | ||||| Sbjct 223126 CCAACAACGTCTGATTTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGAGTGACTA 223067 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| ||||| || |||| || ||| | |||||||| Sbjct 223066 CAACATTCAGAAAGAATCCACCCTTCATTTGGTGTTGCG 223028 >seq159 Length=112901 Score = 109 bits (120), Expect = 6e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || || || || || ||||| || || || | ||||| || ||||| | |||||| Sbjct 34001 TTCAATGCAATTGAAACTATGCCTTGTGTAAAGAAAAAGGCTGACTGGGCTATACGCTGG 33942 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 ||| | || | | ||| ||| | ||| | | | || || || || || || || Sbjct 33941 ATCAATGCCAAAAATGCCAGCTTTGCAGAGAGAGTTATTGCTTTTGCTGCAGTGGAAGGG 33882 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 ||||||| || || ||| || |||| ||||||||||||||| | || ||||||| Sbjct 33881 ATCTTCTTCTCTGGTTCTTTTGCTTCCATCTTTTGGCTCAAGAAAAGAGGTATCATGCCA 33822 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||||||| |||||||| || || ||| |||||| |||| Sbjct 33821 GGCCTGACATTCAGCAATGAACTTATCAGCAGGGATGAGG 33782 >seq304 Length=94255 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || | || || || ||||| ||| | || || || ||| Sbjct 597 AACATGCAGATTTTTGTGAAGACTTTGACTGGGAAGACCATTACCCTTGAGGTAGA-GCC 539 Query 40747 ACC-GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | || | | | ||| | |||| || |||| ||||||||||| || || | || Sbjct 538 ATCAGATACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAAGAGGGGATACCACCTGA 479 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||||| || || | || || ||||||||||| || | |||||||| | ||||| Sbjct 478 CCAACAACGTCTGATTTTTGCTGGTAAACAGCTGGAAGATGGACGCACCCTGAGTGACTA 419 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| ||||| || | || || ||| | |||||||| || | || ||| Sbjct 418 CAACATTCAGAAAGAATCTACCCTTCATTTGGTGTTGCGTCTGCGTGGTGGC 367 >seq3547 Length=186543 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || | |||| || ||||| ||||| || || | ||| Sbjct 89059 GGCATCCCCCCAGACCAGCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGC 89000 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||| |||||||||||||||||||||| |||| || || ||||| Sbjct 88999 ACCCTCAGCGACTACAACATCCAGAAGGAGTCCACTCTCCACTTAGTG 88952 >seq282 Length=97041 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || | || | || ||||| ||||| || || | ||| Sbjct 90702 GGCATCCCCCCAGACCAGCAGCGTTTGATATTTGCTGGCAAGCAGCTTGAGGATGGTCGC 90643 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||| |||||||||||||||||||||| |||| || || ||||| Sbjct 90642 ACCCTCAGCGACTACAACATCCAGAAGGAGTCCACTCTCCACTTAGTG 90595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515194533880800