Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24]
3,830 sequences; 425,494,968 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq2929 105 1e-17
seq3572 84.2 4e-11
>seq2929
Length=2839
Score = 105 bits (116), Expect = 1e-17
Identities = 120/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 189468 TGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGA 189527
|||| ||||| | ||| || || |||||| | || | ||||||| ||||| ||||| |
Sbjct 1786 TGCAAATGGTAAAAGAGGGCAAGATGCATGGATTCCTCAGAATGTACTGGGCAAAGAAAA 1845
Query 189528 TACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAGTATCTATTTGAACAACA 189587
| || || ||||| || | ||||| || ||||||| |||||| ||| | || | |
Sbjct 1846 TCCTGGAGTGGACCAGCAGTCCTGAGGAGGCTTTGAAAATTAGTATTTATCTCAATGATA 1905
Query 189588 AGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 189628
||| || |||||||| | |||||||| ||||||||||||
Sbjct 1906 GGTATGAGCTAGACGGAAGAGATCCTAATGGATACGTAGGT 1946
>seq3572
Length=181463
Score = 84.2 bits (92), Expect = 4e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 189470 CAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATA 189529
|| ||||| | ||| || || |||||| | || | ||||||| ||||| ||||| ||
Sbjct 84503 CAAATGGTAAAAGAGGGCAAGATGCATGGATTCCTCAGAATGTACTGGGCAAAGAAAATC 84444
Query 189530 CTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAGTATCTATTTGAACAACAAG 189589
|| || ||||| | | || || || ||||||| |||||| ||| | || | | |
Sbjct 84443 CTGGAGTGGACCACCAGTCCCGAGGAGGCTTTGAAAATTAGTATTTATCTCAATGATAGG 84384
Query 189590 TACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 189628
|| || || || || | |||||||| ||||||||||||
Sbjct 84383 TATGAGCTGGATGGAAGAGATCCTAATGGATACGTAGGT 84345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923152601953200
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |