Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq578 114 1e-20 seq669 109 6e-19 seq3798 105 8e-18 seq3316 104 3e-17 seq1535 102 9e-17 seq3462 100 3e-16 seq2201 100 3e-16 seq80 100 3e-16 seq3521 98.7 1e-15 seq3276 98.7 1e-15 seq3430 96.9 4e-15 seq3113 95.1 1e-14 >seq578 Length=65378 Score = 114 bits (126), Expect = 1e-20 Identities = 92/110 (84%), Gaps = 7/110 (6%) Strand=Plus/Minus Query 60057 AAAAATTTTCT----CCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||||||||||| || || | |||||| |||||| ||||||||||||||||||||| Sbjct 51486 AAAAATTTTCTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGG 51427 Query 60113 ATACTCACCACTATACTACCGAGGATTGAATATATAACTT---GAATATT 60159 |||||||||||||||||| |||||||||| | || ||||| ||||||| Sbjct 51426 ATACTCACCACTATACTATCGAGGATTGACTGTAGAACTTACAGAATATT 51377 Score = 105 bits (116), Expect = 8e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 60058 AAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| ||||| ||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 50455 AAAGTTTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 50396 Query 60117 TCACCACTATACTACCGAGGATTGA 60141 |||||||||||||| |||||||||| Sbjct 50395 TCACCACTATACTATCGAGGATTGA 50371 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 47077 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 47018 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 47017 TACTATCGAGGATTG 47003 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| |||||| |||||| Sbjct 45965 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCTCCACTA 45906 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 45905 TACTATCGAGGAATGA 45890 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||||| |||||||||||||| ||||||||||||| Sbjct 52631 CTCCCCGACGGGGAATTGAACCCCGGTCTCTCGCGTGACAGGCGGGGATACTCACCACTA 52572 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 52571 TACTATCGAGGATTG 52557 >seq669 Length=503207 Score = 109 bits (120), Expect = 6e-19 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 210374 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 210315 Query 60126 TACTACCGAGGATTGAAT 60143 ||||| |||||||||||| Sbjct 210314 TACTATCGAGGATTGAAT 210297 Score = 104 bits (114), Expect = 3e-17 Identities = 76/88 (86%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 60057 AAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||| || |||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 216630 AAAAATATTACCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 216571 Query 60114 TACTCACCACTATACTACCGAGGATTGA 60141 ||||||||||||||||| |||||| ||| Sbjct 216570 TACTCACCACTATACTATCGAGGACTGA 216543 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 211422 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 211363 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||||||| Sbjct 211362 TACTATCGAGGATTGA 211347 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 218853 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 218794 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 218793 TACTATCGAGGATTG 218779 Score = 98.7 bits (108), Expect = 1e-15 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | |||||| |||||| ||||||||||||||||||||| | |||||||| Sbjct 217671 TTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGACACTCACCA 217612 Query 60123 CTATACTACCGAGGATTGAATATATAACT 60151 |||||||| ||||||||| | || |||| Sbjct 217611 CTATACTATCGAGGATTGGCTGTAGAACT 217583 >seq3798 Length=601964 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 440364 AAAAACTATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 440423 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||| |||||| Sbjct 440424 TCACCACTATACTATCGAGGA 440444 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 446504 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 446563 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 446564 ATACTATCGAGGA 446576 >seq3316 Length=247066 Score = 104 bits (114), Expect = 3e-17 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||| || |||| || | |||||| |||||| ||||||||||||||||||||| || Sbjct 107092 AAAAATATTGCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 107151 Query 60115 ACTCACCACTATACTACCGAGGATTG 60140 |||||||||||||||| ||||||||| Sbjct 107152 ACTCACCACTATACTATCGAGGATTG 107177 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||||||||||||||||||||| ||||||||||||| Sbjct 124913 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGAGATACTCACCACTA 124854 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 124853 TACTATCGAGGATTG 124839 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 109370 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 109429 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 109430 TACTATCGAGGATTG 109444 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 110099 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 110158 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 110159 TACTATCGAGGATTG 110173 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 111149 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 111208 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 111209 TACTATCGAGGATTG 111223 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 106702 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 106761 Query 60126 TACTACCGAGGATT 60139 ||||| |||||||| Sbjct 106762 TACTATCGAGGATT 106775 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 108242 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 108301 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 108302 TACTATCGAGGAT 108314 >seq1535 Length=413460 Score = 102 bits (112), Expect = 9e-17 Identities = 75/87 (86%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 60057 AAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||||| |||| || | |||||| |||||| ||||||||||||||||||||| | Sbjct 240171 AAAAATTTCTGCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 240230 Query 60114 TACTCACCACTATACTACCGAGGATTG 60140 ||||||||||||||||| ||||||||| Sbjct 240231 TACTCACCACTATACTATCGAGGATTG 240257 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 234933 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 234992 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 234993 TACTATCGAGGATTG 235007 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 233519 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 233578 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 233579 TACTATCGAGGACTG 233593 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 238793 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 238852 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 238853 TACTATCGAGGACTG 238867 >seq3462 Length=206785 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| |||||| |||||| Sbjct 24127 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCGCCACTA 24068 Query 60126 TACTACCGAGGATTGAATAT 60145 ||||| |||||| ||||||| Sbjct 24067 TACTATCGAGGACTGAATAT 24048 >seq2201 Length=361587 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| |||||| |||||| Sbjct 226082 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCGCCACTA 226141 Query 60126 TACTACCGAGGATTGAATAT 60145 ||||| |||||| ||||||| Sbjct 226142 TACTATCGAGGACTGAATAT 226161 >seq80 Length=582438 Score = 100 bits (110), Expect = 3e-16 Identities = 80/96 (83%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 340611 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 340552 Query 60126 TACTACCGAGGA----TTGAATATATAACTTGAATA 60157 ||||| |||||| ||| | |||| | |||||| Sbjct 340551 TACTATCGAGGACTGGTTGCAAATATTATGTGAATA 340516 >seq3521 Length=659678 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 241531 AAAAATCACCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 241590 Query 60117 TCACCACTATACTACCGAGGAT 60138 |||||||||||||| ||||||| Sbjct 241591 TCACCACTATACTATCGAGGAT 241612 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 240301 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 240360 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 240361 TACTATCGAGGAT 240373 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 60068 CCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 || || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| | Sbjct 252717 CCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTAAA 252776 Query 60128 CTACCGAGGAT 60138 ||| |||| || Sbjct 252777 CTATCGAGAAT 252787 >seq3276 Length=1305080 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || |||| |||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 264361 AAGAATTGCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 264302 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | |||||||||||| |||||| || Sbjct 264301 TTACCACTATACTATCGAGGACTG 264278 >seq3430 Length=213773 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/87 (85%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 60057 AAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||||| |||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 3524 AAAAATTTCGACCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 3583 Query 60114 TACTCACCACTATACTACCGAGGATTG 60140 |||| |||||||||||| |||||| || Sbjct 3584 TACTTACCACTATACTATCGAGGACTG 3610 >seq3113 Length=310813 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 42526 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 42467 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 42466 TACTATCGAGGACTG 42452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571790224232400