Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq159 91.5 1e-13 >seq159 Length=112901 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 15928 TGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCC 15987 |||||| ||| |||||| |||||||||| ||||| ||||||||| || || |||||||| Sbjct 32997 TGACATCACTCCCATTTTCTGATATTCACCAACTCGCTTTTCAAAAAAGTTGGTTTTTCC 33056 Query 15988 TTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 ||| || || || | ||||| || ||||| || |||| Sbjct 33057 TTCCAAAGATATGTGCTCCATGAAGTCAAATGGGTTTT 33094 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 16622 AAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAA 16681 || ||||| || || || ||||| ||||| ||||| || || | || || ||||||| Sbjct 34593 AAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATAAAA 34652 Query 16682 tttttttCGT-TATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTC 16740 | |||||| | | || | || | ||||| || ||||| || | ||| || || Sbjct 34653 TGTTTTTCCTCTGGCTTCAGCTTCTC-CCAGTGTCCTAAGTCTTTAGAAAGATCTACTTC 34711 Query 16741 TTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAAC 16800 ||| ||||||||||||| || | || ||||| ||||||||||| ||||||| || Sbjct 34712 TTCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATATTT 34771 Query 16801 AATAGGAAA 16809 |||||||| Sbjct 34772 TATAGGAAA 34780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462489857238000