Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq159 127 2e-24 seq3215 107 2e-18 seq3660 89.7 5e-13 seq1979 89.7 5e-13 >seq159 Length=112901 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 |||||||||||| | | || || || | | |||||||| ||||| || |||||| | Sbjct 34822 GATGAACCACTTCTTCGTGACAACCCAAATCGTTTTGTCATTTTTCCTATAAAATATCAA 34763 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||||| ||||| ||||||||||| ||||| ||||| |||||||| | ||||||||||| Sbjct 34762 GACATCTGGAAAATGTACAAAAAAGCAGAGGCATCTTTTTGGACTGCTGAAGAAGTAGAT 34703 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || | | | ||||| || || | || | | |||||||| Sbjct 34702 CTTTCTAAAGACTTAGGACACTGGGAGAAGCTGAAGCCAGAGGAAAAACATTTTATTTCT 34643 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || || ||||| || || || || ||||| ||||| || || |||||||| Sbjct 34642 CATGTATTGGCCTTCTTTGCTGCTAGTGATGGCATTGTCAATGAAAATTTGGT 34590 >seq3215 Length=281622 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || ||||| |||||||| || |||||| | || || || || || Sbjct 220171 ATGCAGATCTTTGTCAAAACTCTCACAGGCAAGACCATCACCCTGGAGGTAGAGCCCTCA 220112 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | || ||||| |||||| | || || || ||| Sbjct 220111 GATACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 220052 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || ||||| || ||||||||||| | || ||||||| || ||| Sbjct 220051 CAGCGTTTGATCTTTGCTGGGAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 219992 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| ||||| || ||||| ||||| || || Sbjct 219991 ATTCAGAAAGAGTCCACTCTCCATCTTGTGCT 219960 >seq3660 Length=165149 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 |||||||||||||| || || || | || |||||||| || || || | || ||| Sbjct 79214 GTGTACTCTACAATCTCTGTGCACAAGTTACTACACTTGATGGTTCCTAGGTTCTGCTGA 79155 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||||| || | || ||||| |||||||| |||||||| |||||||| || || ||| Sbjct 79154 TTGCTCTTCCTGTTACACGAGTCCTTGTACAGCATGTAAGGCGTGCCTGTTTCTGTCTGG 79095 Query 23183 GACTCGATGATCGCTCGCCACA 23204 ||||| || || || ||||| Sbjct 79094 GACTCTATTATGGCATACCACA 79073 >seq1979 Length=378058 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 |||||||||||||| || || || | || |||||||| || || |||| || ||| Sbjct 363390 GTGTACTCTACAATCTCTGTGCACAAGTTACTACACTTGATGGTTCCCAGGTTCTGCTGA 363331 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||||| || | || ||||| |||||||| |||||||| || ||||| || || ||| Sbjct 363330 TTGCTCTTCCTGTTACACGAGTCCTTGTACAGCATGTAAGGTGTGCCTGTTTCTGTCTGG 363271 Query 23183 GACTCGATGATCGCTCGCCACA 23204 ||||| || || || ||||| Sbjct 363270 GACTCTATTATGGCATACCACA 363249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445745058933600