Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq159 170 2e-37 seq3660 96.9 4e-15 seq1979 91.5 2e-13 >seq159 Length=112901 Score = 170 bits (188), Expect = 2e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 ||||||||||| || || |||||||| || ||||| || ||||||||||| |||||| Sbjct 34593 AAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATAAAA 34652 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 34085 | |||||| ||||| | || || | ||| | | |||||||| | ||| |||||| Sbjct 34653 TGTTTTTCCTCTGGCTTCAGCTTCTCCCAGTGTCCTAAGTCTTTAGAAAGATCTACTTCT 34712 Query 34086 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 34145 || | |||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||| Sbjct 34713 TCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATATTTT 34772 Query 34146 ATTGGGAAAATAACAAATCTATTTGGATT 34174 || || ||||| ||||| | |||||| || Sbjct 34773 ATAGGAAAAATGACAAAACGATTTGGGTT 34801 Score = 141 bits (156), Expect = 1e-28 Identities = 166/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || || || | ||| || || || || || ||||| | || | || | Sbjct 33782 CCTCATCCCTGCTGATAAGTTCATTGCTGAATGTCAGGCCTGGCATGATACCTCTTTTCT 33841 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| |||||||| || || || || |||||||| ||||| ||||||||||| | Sbjct 33842 TGAGCCAAAAGATGGAAGCAAAAGAACCAGAGAAGAAGATCCCTTCCACTGCAGCAAAAG 33901 Query 33724 CAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGG 33780 |||||| ||||||| || | | ||| || ||| ||||| | |||||| || | Sbjct 33902 CAATAACTCTCTCTGCAAAGCTGGCATTTTTGGCATTGATCCAGCGTATAGCCCAGTCAG 33961 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 |||| || |||||||||||||| ||||| || ||||| |||||| Sbjct 33962 CCTTTTTCTTTACACAAGGCATAGTTTCAATTGCATTGAAGAGA 34005 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| ||||||||||| || |||||||| || || ||||| ||||| || ||||||||| Sbjct 32998 GACATCACTCCCATTTTCTGATATTCACCAACTCGCTTTTCAAAAAAGTTGGTTTTTCCT 33057 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 ||||| ||||| | |||||||| ||||| || || Sbjct 33058 TCCAAAGATATGTGCTCCATGAAGTCAAATGGGTT 33092 Score = 82.4 bits (90), Expect = 1e-10 Identities = 93/121 (77%), Gaps = 3/121 (2%) Strand=Plus/Plus Query 33851 ATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAA 33910 |||||| || || | | || |||||||| || |||||||||||||| || || || || Sbjct 34320 ATAAGTGTCTATAAGCAAGCTGTACATTTCAGAGTGAATGTTTTCAATTGCAATTTGGAA 34379 Query 33911 TCCGTAGAAACATCTAGCCTCGGTAATCTGCA-CTTCTGTACAAAATCGTTCT-GCTAAA 33968 ||| ||||| || |||||||| || ||||| | || ||| ||||| || ||| ||||| Sbjct 34380 TCCATAGAAGCACCTAGCCTCTGTGATCTGGACCTCCTGGGCAAAA-CGCTCTACCTAAA 34438 Query 33969 T 33969 | Sbjct 34439 T 34439 >seq3660 Length=165149 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 ||||| ||||| | |||||||||||||| ||||||| || || ||||| ||||| || Sbjct 79202 ATCTCTGTGCACAAGTTACTACACTTGATGGTTCCTAGGTTCTGCTGATTGCTCTTCCTG 79143 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 ||||||| ||||| || || ||| | || || || ||||| |||| || ||||| || Sbjct 79142 TTACACGAGTCCTTGTACAGCATGTAAGGCGTGCCTGTTTCTGTCTGGGACTCTATTATG 79083 Query 63117 GCTTTCCA 63124 || | ||| Sbjct 79082 GCATACCA 79075 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| |||| |||||| || ||||||||||| || || | || || ||||| || |||| Sbjct 75436 CACTGAATACTTTTTTCGTCTCCTTGTGTAGGTTAGAGACAGCAATCCTGGCAGCAAGAA 75377 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 ||||||| || || || | || |||||||| | || || |||||| |||||| Sbjct 75376 TGGCATAGTCTGGGTGCTTGACCGTCATGGTGGCTGCAGTCTCAGCAGCCAGATTGTCCA 75317 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAG 64173 |||||| || || |||||| || | ||| || ||||||| || Sbjct 75316 GTTCTACTGTGGTCACTCCAGGGTACAGTCCACTGATCACCTTCAGAG 75269 >seq1979 Length=378058 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 ||||| ||||| | |||||||||||||| ||||| | || || ||||| ||||| || Sbjct 363378 ATCTCTGTGCACAAGTTACTACACTTGATGGTTCCCAGGTTCTGCTGATTGCTCTTCCTG 363319 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 ||||||| ||||| || || ||| | || || || ||||| |||| || ||||| || Sbjct 363318 TTACACGAGTCCTTGTACAGCATGTAAGGTGTGCCTGTTTCTGTCTGGGACTCTATTATG 363259 Query 63117 GCTTTCCA 63124 || | ||| Sbjct 363258 GCATACCA 363251 Score = 82.4 bits (90), Expect = 1e-10 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| |||| |||||| || ||||||||||| || || | || || || || || |||| Sbjct 359687 CACTGAATACTTTTTTCGTCTCCTTGTGTAGGTTAGAGACAGCAATCCTCGCAGCAAGAA 359628 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 ||||||| || || || | || ||||| || | || || |||||| |||||| Sbjct 359627 TGGCATAGTCTGGGTGCTTGACCGTCATGGTGGCCGCAGTCTCAGCAGCCAGATTGTCCA 359568 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAG 64173 |||||| || || |||||| || | ||| || ||||||| || Sbjct 359567 GTTCTACTGTGGTCACTCCAGGGTACAGTCCACTGATCACCTTCAGAG 359520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629787447482400