Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq159 140 3e-28 seq3660 89.7 5e-13 seq1979 86.0 6e-12 >seq159 Length=112901 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 12014 AAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAG 12073 ||||| ||||| ||||| |||||||||| ||||| || || | || ||| ||||| Sbjct 34593 AAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATAAAA 34652 Query 12074 TATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCT 12133 | |||||| ||| | | || ||||| | |||| ||||| || | |||||||||| Sbjct 34653 TGTTTTTCCTCTGGCTTCAGCTTCTCCCAGTGTCCTAAGTCTTTAGAAAGATCTACTTCT 34712 Query 12134 TCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTA 12193 ||| | ||||||||| |||| ||| || ||| |||||||||||||| || ||||| || Sbjct 34713 TCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATATTTT 34772 Query 12194 ATAGGGAAAATAACGAA 12210 ||||| ||||| || || Sbjct 34773 ATAGGAAAAATGACAAA 34789 >seq3660 Length=165149 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 37137 AACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAAT 37196 |||||| || |||||||| | || |||||||| || | ||||| || ||||| || || Sbjct 81180 AACCTGGAATTCTCCAGAGAGCACCCTTCTTGTGTAGAGGTTGCTGGTGTATGGCTCTAT 81121 Query 37197 GGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAG 37256 ||||||||| |||| | ||||| | |||||| || || ||||| || || | | || Sbjct 81120 GGACTCATTGTTACCAAGGATTTGTGCTGTAGAAGCTGTGGGCATGGGGGCCAGCAACAG 81061 Query 37257 GCTATTTCTCAATCCAT 37273 ||| || || | ||||| Sbjct 81060 GCTGTTCCTTACTCCAT 81044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 ||||| | | |||||||||||||||| || | || |||||| | | || | | Sbjct 81869 TCCATGCAAAGAAATGCATACTGGTCAACTTCCCATAGTTAGGATCAGCAATGTGGACAT 81810 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 | | || ||||| || || ||| | ||||| ||||| |||||||| | | |||| | Sbjct 81809 TTAGAGACTGACTCTGGTCAATATATGCACCCCTGTCAGCTGCCATCTGGATAATATTCT 81750 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGG 37031 | || || |||||||| || || ||||| | ||||| |||| |||||| Sbjct 81749 TCTGGGAGATCTCCCACACTGTCTTATACAACTGTTTGATATCATCTGG 81701 >seq1979 Length=378058 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 37137 AACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAAT 37196 |||||| || |||||||| | || || ||||| || | ||||| || ||||| || || Sbjct 365318 AACCTGGAATTCTCCAGAGAGCACCCTCCTTGTGTAGAGGTTGCTGGTGTATGGCTCTAT 365259 Query 37197 GGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAG 37256 ||||||||| |||| | ||||| | |||||| || || ||||| || || | | || Sbjct 365258 GGACTCATTGTTACCAAGGATTTGTGCTGTAGAAGCTGTGGGCATGGGGGCCAGCAACAG 365199 Query 37257 GCTATTTCTCAATCCAT 37273 ||| || || | ||||| Sbjct 365198 GCTGTTCCTGACTCCAT 365182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468502369375200