Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq304 134 1e-26 seq3215 131 2e-25 >seq304 Length=94255 Score = 134 bits (148), Expect = 1e-26 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||| || || |||| ||||| ||||| |||||||| || || || Sbjct 367 GCCACCACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACT 426 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| || | ||||| ||||||||||||||| | ||||||||||| || || || | Sbjct 427 CAGGGTGCGTCCA-TCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTG 485 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 |||| || |||||||| ||| | || | || | | ||| | || || | ||||| Sbjct 486 GTATCCCCTCTTTGTC-TTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCT 544 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| ||| | ||||| || ||||| || || || || || ||||| Sbjct 545 ACCTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 594 >seq3215 Length=281622 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| |||||| || || |||| || || ||||| |||||||| || || || Sbjct 223015 GCCACCACGTAGACGCAACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACT 223074 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| ||||||||||||||| | ||||||||||| || || || || Sbjct 223075 CAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGG 223134 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||| || |||||||| ||| | || | || | | ||| | || || | ||||| | Sbjct 223135 TATCCCCTCTTTGTC-TTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTA 223193 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | ||||| || ||||| || || || || || ||||| Sbjct 223194 CCTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 223242 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||||| || | || | || |||||||| |||||||| || ||| Sbjct 219942 TGGCCACCACGGAGACGCAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCG 220001 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| |||| ||||| | ||| || |||||| |||||| ||| |||||||| || Sbjct 220002 CTCAAGGTGCGACCATCTTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGG 220061 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || |||||||||||||| ||| || || | | ||| | || || | |||||| Sbjct 220062 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCT 220121 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||| | |||||||| || | ||||| || || || |||||| Sbjct 220122 ACCTCCAGGGTGATGGTCTTGCCTGTGAGAGTTTTGACAAAGATCTGCATA 220172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496040250936000