Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq159 165 1e-35 seq3660 100 4e-16 seq1979 91.5 2e-13 >seq159 Length=112901 Score = 165 bits (182), Expect = 1e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 50344 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 50403 ||||||||||| || || || ||||| || ||||| || ||||||||||| |||||| Sbjct 34593 AAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATAAAA 34652 Query 50404 TGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 50463 |||||||| | || | || || | ||| | | |||||||| | |||||||||| Sbjct 34653 TGTTTTTCCTCTGGCTTCAGCTTCTCCCAGTGTCCTAAGTCTTTAGAAAGATCTACTTCT 34712 Query 50464 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 50523 || | |||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||| Sbjct 34713 TCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATATTTT 34772 Query 50524 ATTGGGAAAATAACAAATCTATTTGGATT 50552 || || ||||| ||||| | |||||| || Sbjct 34773 ATAGGAAAAATGACAAAACGATTTGGGTT 34801 Score = 150 bits (166), Expect = 3e-31 Identities = 168/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || || || ||||| ||| || || || || ||||| | || | || | Sbjct 33782 CCTCATCCCTGCTGATAAGTTCATTGCTGAATGTCAGGCCTGGCATGATACCTCTTTTCT 33841 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| ||||| ||||| || ||||| |||||||| ||||| ||||| ||||| | Sbjct 33842 TGAGCCAAAAGATGGAAGCAAAAGAACCAGAGAAGAAGATCCCTTCCACTGCAGCAAAAG 33901 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGT---CATGTATCCACTTTTGAGCCCAATCGG 50158 ||| || ||||||| || | ||||| | | ||| ||||| | |||||| || | Sbjct 33902 CAATAACTCTCTCTGCAAAGCTGGCATTTTTGGCATTGATCCAGCGTATAGCCCAGTCAG 33961 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 |||| || |||||||||||||| ||||| || ||||| |||||| Sbjct 33962 CCTTTTTCTTTACACAAGGCATAGTTTCAATTGCATTGAAGAGA 34005 Score = 100 bits (110), Expect = 4e-16 Identities = 112/147 (76%), Gaps = 12/147 (8%) Strand=Plus/Plus Query 49614 TTAAAAGTCAACATCTAGAGAAAAATG---ATTA---TCTTCTT-----GA-GACATAAC 49661 ||||||||| |||| || | ||| || |||| ||| ||| || ||||| || Sbjct 32946 TTAAAAGTCTGCATCAAGGGTAAATTGGTGATTACTTTCTCCTTTTGTGGATGACATCAC 33005 Query 49662 TCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGA 49721 ||||||||| || |||||||| || || ||||| ||||| || |||||||||||||| || Sbjct 33006 TCCCATTTTCTGATATTCACCAACTCGCTTTTCAAAAAAGTTGGTTTTTCCTTCCAAAGA 33065 Query 49722 TATATTTTCCATGAAATCAAACGGATT 49748 ||| | |||||||| ||||| || || Sbjct 33066 TATGTGCTCCATGAAGTCAAATGGGTT 33092 >seq3660 Length=165149 Score = 100 bits (110), Expect = 4e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| |||| |||||| || ||||||||||| || || || || || ||||| || | || Sbjct 75436 CACTGAATACTTTTTTCGTCTCCTTGTGTAGGTTAGAGACAGCAATCCTGGCAGCAAGAA 75377 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||||| ||||| || | || |||||||| | || || |||||| |||||| Sbjct 75376 TGGCATAGTCTGGGTGCTTGACCGTCATGGTGGCTGCAGTCTCAGCAGCCAGATTGTCCA 75317 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 80845 |||||| || || |||||| || | ||| ||| ||||||| || Sbjct 75316 GTTCTACTGTGGTCACTCCAGGGTACAGTCCACTGATCACCTTCAGAG 75269 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 || || ||||| | |||||||||||| |||||||||| || || ||||| ||||| || Sbjct 79202 ATCTCTGTGCACAAGTTACTACACTTGATGGTTCCTAGGTTCTGCTGATTGCTCTTCCTG 79143 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 ||||||| ||||| || || ||| | || || || ||||| |||| || ||||| || Sbjct 79142 TTACACGAGTCCTTGTACAGCATGTAAGGCGTGCCTGTTTCTGTCTGGGACTCTATTATG 79083 Query 79789 GCTTTCCA 79796 || | ||| Sbjct 79082 GCATACCA 79075 >seq1979 Length=378058 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| |||| |||||| || ||||||||||| || || || || || || || || | || Sbjct 359687 CACTGAATACTTTTTTCGTCTCCTTGTGTAGGTTAGAGACAGCAATCCTCGCAGCAAGAA 359628 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||||| ||||| || | || ||||| || | || || |||||| |||||| Sbjct 359627 TGGCATAGTCTGGGTGCTTGACCGTCATGGTGGCCGCAGTCTCAGCAGCCAGATTGTCCA 359568 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 80845 |||||| || || |||||| || | ||| ||| ||||||| || Sbjct 359567 GTTCTACTGTGGTCACTCCAGGGTACAGTCCACTGATCACCTTCAGAG 359520 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 || || ||||| | |||||||||||| |||||||| | || || ||||| ||||| || Sbjct 363378 ATCTCTGTGCACAAGTTACTACACTTGATGGTTCCCAGGTTCTGCTGATTGCTCTTCCTG 363319 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 ||||||| ||||| || || ||| | || || || ||||| |||| || ||||| || Sbjct 363318 TTACACGAGTCCTTGTACAGCATGTAAGGTGTGCCTGTTTCTGTCTGGGACTCTATTATG 363259 Query 79789 GCTTTCCA 79796 || | ||| Sbjct 363258 GCATACCA 363251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718234412881200