Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq159 129 6e-25 >seq159 Length=112901 Score = 129 bits (142), Expect = 6e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 ||||||||||||| || || ||||||||||| ||||| || ||||||| | ||||| Sbjct 34591 CCAAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATAA 34650 Query 14317 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTT 14376 | | || || || || || || | ||| | ||| || |||||||||||||||| Sbjct 34651 AATGTTTTTCCTCTGGCTTCAGCTTCTCCCAGTGTCCTAAGTCTTTAGAAAGATCTACTT 34710 Query 14377 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14436 | ||| | ||||||||| || | |||||||| |||||| ||| || |||| |||| Sbjct 34711 CTTCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATATT 34770 Query 14437 ATATAGGAAAAACTACAAA 14455 ||||||||||| ||||| Sbjct 34771 TTATAGGAAAAATGACAAA 34789 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||| || || |||||||| || ||||| | |||||||| | |||| ||| | Sbjct 33782 CCTCATCCCTGCTGATAAGTTCATTGCTGAATGTCAGGCCTGGCATGATACCTCTTTTCT 33841 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | |||||| || | |||||| || || || ||||| || || || ||||||||||| | Sbjct 33842 TGAGCCAAAAGATGGAAGCAAAAGAACCAGAGAAGAAGATCCCTTCCACTGCAGCAAAAG 33901 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | || | || ||| |||| || |||||| ||||| | ||||||| |||| Sbjct 33902 CAATAACTCTCTCTGCAAAGCTGGCATTTTTGGCATTGATCCAGCGTATAGCCCAGTCAG 33961 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCC 14123 ||||| || | | || ||| |||||||| ||||| || | | ||||| Sbjct 33962 CCTTTTTCTTTACACAAGGCATAGTTTCAATTGCATTGAAGAGAAATTCC 34011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479705033022000