Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq159 134 1e-26 >seq159 Length=112901 Score = 134 bits (148), Expect = 1e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 14045 CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 |||| |||||||| ||||| ||||||||||| ||||| || ||||||| | ||||| Sbjct 34591 CCAAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATAA 34650 Query 14105 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 | | || || || || || || | ||| | |||| || |||||||||||||||| Sbjct 34651 AATGTTTTTCCTCTGGCTTCAGCTTCTCCCAGTGTCCTAAGTCTTTAGAAAGATCTACTT 34710 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14224 | ||| | ||||||||| || | |||||||| |||||| ||| || |||| |||| Sbjct 34711 CTTCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATATT 34770 Query 14225 ATATAGGAAAAACTACAAA 14243 ||||||||||| ||||| Sbjct 34771 TTATAGGAAAAATGACAAA 34789 Score = 116 bits (128), Expect = 4e-21 Identities = 160/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||| || || |||||||| || ||||| | |||||||| | |||| ||| | Sbjct 33782 CCTCATCCCTGCTGATAAGTTCATTGCTGAATGTCAGGCCTGGCATGATACCTCTTTTCT 33841 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | |||||| || | ||| || || || || ||||| || || || ||||||||||| | Sbjct 33842 TGAGCCAAAAGATGGAAGCAAAAGAACCAGAGAAGAAGATCCCTTCCACTGCAGCAAAAG 33901 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTG--TTTGATATCCATTTTCTAGCCCATTC 13859 | || | || ||| |||| || |||||| ||| ||||| | ||||||| || Sbjct 33902 CAATAACTCTCTCTGCAAAGCTGGCATTTTTGGCATTG--ATCCAGCGTATAGCCCAGTC 33959 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 || ||||| || | | || ||| ||||| ||||||||||| Sbjct 33960 AGCCTTTTTCTTTACACAAGGCATAGTTTCAATTGCATTGAA 34001 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || |||||||| |||||||||| ||||| |||||||||||||| ||||| ||| Sbjct 32998 GACATCACTCCCATTTTCTGATATTCACCAACTCGCTTTTCAAAAAAGTTGGTTTTTCCT 33057 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||| ||||| | ||||| || || ||||| ||| Sbjct 33058 TCCAAAGATATGTGCTCCATGAAGTCAAATGGGTTT 33093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478565887561200