Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq159 150 2e-31 seq3660 105 9e-18 seq1979 96.9 5e-15 >seq159 Length=112901 Score = 150 bits (166), Expect = 2e-31 Identities = 168/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || || || | ||| ||| || || || || ||||| | || | || | Sbjct 33782 CCTCATCCCTGCTGATAAGTTCATTGCTGAATGTCAGGCCTGGCATGATACCTCTTTTCT 33841 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || ||||| |||||||| ||||| ||||| ||||| | Sbjct 33842 TGAGCCAAAAGATGGAAGCAAAAGAACCAGAGAAGAAGATCCCTTCCACTGCAGCAAAAG 33901 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGT---CATGTATCCACTTTTGAGCCCAATCGG 42263 |||||| ||||||| || | | |||| | | ||| ||||| | |||||| || | Sbjct 33902 CAATAACTCTCTCTGCAAAGCTGGCATTTTTGGCATTGATCCAGCGTATAGCCCAGTCAG 33961 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 |||| || |||||||||||||| ||||| || ||||| |||||| Sbjct 33962 CCTTTTTCTTTACACAAGGCATAGTTTCAATTGCATTGAAGAGA 34005 Score = 147 bits (162), Expect = 3e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42449 AAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 42508 |||||||| || || || || ||||| || ||||| || ||||||||||| |||||| Sbjct 34593 AAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATAAAA 34652 Query 42509 TATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 42568 | |||||| || || | | || | ||| | | |||||||| | |||||||||| Sbjct 34653 TGTTTTTCCTCTGGCTTCAGCTTCTCCCAGTGTCCTAAGTCTTTAGAAAGATCTACTTCT 34712 Query 42569 TCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGA 42628 || | |||||||| ||||| ||||| ||||| ||||| |||||||| || ||||||| Sbjct 34713 TCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATATTTT 34772 Query 42629 ATTGGGAAAATAACAAATCTATTTGGATT 42657 || || ||||| ||||| | |||||| || Sbjct 34773 ATAGGAAAAATGACAAAACGATTTGGGTT 34801 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| ||||||||||| || |||||||| || || ||||| ||||| || || |||||| Sbjct 32998 GACATCACTCCCATTTTCTGATATTCACCAACTCGCTTTTCAAAAAAGTTGGTTTTTCCT 33057 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 ||||| ||||| | |||||||| ||||| || || Sbjct 33058 TCCAAAGATATGTGCTCCATGAAGTCAAATGGGTT 33092 >seq3660 Length=165149 Score = 105 bits (116), Expect = 9e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| |||||| || ||||||||||| || || || || || ||||| || |||| Sbjct 75436 CACTGAATACTTTTTTCGTCTCCTTGTGTAGGTTAGAGACAGCAATCCTGGCAGCAAGAA 75377 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||| ||||| || | || |||||||| | || || |||||| |||||| Sbjct 75376 TGGCATAGTCTGGGTGCTTGACCGTCATGGTGGCTGCAGTCTCAGCAGCCAGATTGTCCA 75317 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 72928 |||||| || || |||||| || | ||| ||| ||||||| || Sbjct 75316 GTTCTACTGTGGTCACTCCAGGGTACAGTCCACTGATCACCTTCAGAG 75269 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 71748 TATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 71807 || ||| || ||||| | |||||||||||||||||||||| || || ||||| ||||| Sbjct 79206 TACAATCTCTGTGCACAAGTTACTACACTTGATGGTTCCTAGGTTCTGCTGATTGCTCTT 79147 Query 71808 TTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTAT 71867 ||||||||| ||||| || || || | || || || ||||| |||| || ||||| Sbjct 79146 CCTGTTACACGAGTCCTTGTACAGCATGTAAGGCGTGCCTGTTTCTGTCTGGGACTCTAT 79087 Query 71868 AATCGCTTTCCA 71879 || || | ||| Sbjct 79086 TATGGCATACCA 79075 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 ||||| | | ||||||||||| || | || |||| ||||||| || ||||| | || Sbjct 81869 TCCATGCAAAGAAATGCATACTGGTCAACTTCCCATAGTTAGGATCAGCAATGTGGACAT 81810 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | |||||||| || || || | || |||||||| || ||||| | || || ||| Sbjct 81809 TTAGAGACTGACTCTGGTCAATATATGCACCCCTGTCAGCTGCCATCTGGATAATATTCT 81750 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 71038 | || | || ||||| | || ||||| |||| | || ||||| ||||||| Sbjct 81749 TCTGGGAGATCTCCCACACTGTCTTATACAACT-GTTTGATATCATCTGGAA 81699 >seq1979 Length=378058 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| |||||| || ||||||||||| || || || || || || || || |||| Sbjct 359687 CACTGAATACTTTTTTCGTCTCCTTGTGTAGGTTAGAGACAGCAATCCTCGCAGCAAGAA 359628 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||| ||||| || | || ||||| || | || || |||||| |||||| Sbjct 359627 TGGCATAGTCTGGGTGCTTGACCGTCATGGTGGCCGCAGTCTCAGCAGCCAGATTGTCCA 359568 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 72928 |||||| || || |||||| || | ||| ||| ||||||| || Sbjct 359567 GTTCTACTGTGGTCACTCCAGGGTACAGTCCACTGATCACCTTCAGAG 359520 Score = 89.7 bits (98), Expect = 7e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 71748 TATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 71807 || ||| || ||||| | |||||||||||||||||||| | || || ||||| ||||| Sbjct 363382 TACAATCTCTGTGCACAAGTTACTACACTTGATGGTTCCCAGGTTCTGCTGATTGCTCTT 363323 Query 71808 TTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTAT 71867 ||||||||| ||||| || || || | || || || ||||| |||| || ||||| Sbjct 363322 CCTGTTACACGAGTCCTTGTACAGCATGTAAGGTGTGCCTGTTTCTGTCTGGGACTCTAT 363263 Query 71868 AATCGCTTTCCA 71879 || || | ||| Sbjct 363262 TATGGCATACCA 363251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 ||||| | | ||||||||||| || | || |||| ||||||| || ||||| | || Sbjct 366297 TCCATGCAAAGAAATGCATACTGGTCAACTTCCCATAGTTAGGATCAGCAATGTGGACAT 366238 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | |||||||| || || || | || |||||||| || ||||| | || || ||| Sbjct 366237 TAAGAGACTGACTCTGGTCAATATATGCACCCCTGTCAGCTGCCATCTGGATTATATTCT 366178 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 71038 | || | || ||||| | || ||||| |||| | || ||||| ||||||| Sbjct 366177 TCTGGGAGATCTCCCACACTGTCTTATACAACT-GTTTGATATCATCTGGAA 366127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671107069210800