Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3215 136 3e-27 seq304 134 1e-26 >seq3215 Length=281622 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || |||||||||||||| ||||| || |||||||| || || || | | | ||| Sbjct 223031 AACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCCATCT 223090 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| ||||| | |||| |||||||||||| ||| || || |||||||| Sbjct 223091 TCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCT 223150 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||| ||| |||| |||||||| ||||| || | ||||||||| Sbjct 223151 TGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTC 223210 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || |||| ||| || |||||||| ||||| || Sbjct 223211 TTCCCAGTCAAAGTCTTCACAAAAATCTGCATGTT 223245 Score = 113 bits (124), Expect = 3e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| ||||| || |||||||| ||||| | | | | ||||| || || Sbjct 219968 ATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTG 220027 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | |||||||| || || || ||||| ||||||||||| || || Sbjct 220028 CTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGGATCTT 220087 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| |||| |||||||| ||||| || | ||| ||||| || ||||| Sbjct 220088 GGCCTTCACATTTTCAATGGTATCTGAGGGCTCTACCTCCAGGGTGATGGTCTTGCCTGT 220147 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| ||||| || |||||| Sbjct 220148 GAGAGTTTTGACAAAGATCTGCATA 220172 >seq304 Length=94255 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | || | || || ||||||||||| || ||||| || |||||||| || | Sbjct 366 TGCCACCACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCAC 425 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||| | ||||| ||||| | |||| |||||||||||| || Sbjct 426 TCAGGGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTG 485 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || |||||||| ||| ||| ||| ||| |||| |||||||| |||| Sbjct 486 GTATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTA 545 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || | ||||||||| || || |||| ||| || |||||||| ||||| || Sbjct 546 CCTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATGTT 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362162294154030