Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3215 84.2 1e-11 >seq3215 Length=281622 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||| | ||| | || |||||||| || || ||||| || ||| || | Sbjct 219957 CGCAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCA 220016 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || ||||| ||||| ||| ||| || ||||| ||||| || | ||| ||||||||||| Sbjct 220017 TCTTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCTTTG 220076 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || ||| ||| || || ||| | || ||||| || Sbjct 220077 TCTTGGATCTTGGCC---TTCACATTTTCAATGGTATCTGAGGGCTCTACCTCCAGGGTG 220133 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || |||||||| || || || ||||| Sbjct 220134 ATGGTCTTGCCTGTGAGAGTTTTGACAAAGATCTGCAT 220171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318762720059340