Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq3215 105 5e-18 seq304 102 6e-17 >seq3215 Length=281622 Score = 105 bits (116), Expect = 5e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| || ||| ||||| ||||| || || || | | || |||| Sbjct 223031 AACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCCATCT 223090 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| ||||| || ||||| |||| ||||| ||||| | |||| || ||||| ||| Sbjct 223091 TCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCT 223150 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || || || | ||| ||||||| ||||| || || | ||||| || Sbjct 223151 TGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTC 223210 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCT 44130 || || || |||||||||||||| || ||||||| || ||| Sbjct 223211 TTCCCAGTCAAAGTCTTCACAAAAATCTGCATGTTGATTCT 223251 >seq304 Length=94255 Score = 102 bits (112), Expect = 6e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| || || ||||| ||||| || || || | | || |||| Sbjct 383 AACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGTCCATCT 442 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| ||||| || ||||| |||| ||||| ||||| | |||| || ||||| ||| Sbjct 443 TCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCT 502 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || || || | ||| ||||||| ||||| || || | ||||| || Sbjct 503 TGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTC 562 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCT 44130 || || || |||||||||||||| || ||||||| || ||| Sbjct 563 TTCCCAGTCAAAGTCTTCACAAAAATCTGCATGTTGATTCT 603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354761039646840