Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq304 165 2e-35 seq3215 159 8e-34 seq159 123 6e-23 seq2929 107 4e-18 seq3572 104 5e-17 seq3567 98.7 2e-15 seq125 89.7 1e-12 >seq304 Length=94255 Score = 165 bits (182), Expect = 2e-35 Identities = 157/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||||||||| || |||||| || || | || ||||| || ||||| ||| Sbjct 398 GTAGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGTCCATCTTCCAGCTGTTTACCA 457 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||| ||||| ||||| || ||||| || |||||||| || || Sbjct 458 GCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTGAATCTTGGCCTTC 517 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||||| || |||||||| || ||||| ||||| ||||| | || Sbjct 518 ACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTTCCCAGTCAAAGTC 577 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||| ||| Sbjct 578 TTCACAAAAATCTGCATGTTG 598 >seq3215 Length=281622 Score = 159 bits (176), Expect = 8e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||||||||| || |||||| || || | || ||||| || ||||| ||| Sbjct 223046 GTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCCATCTTCCAGCTGTTTACCA 223105 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||| ||||| ||||| || ||||| || |||||||| || || Sbjct 223106 GCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTGTCTTGAATCTTGGCCTTC 223165 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||||| || |||||||| || ||||| ||||| ||||| | || Sbjct 223166 ACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATGGTCTTCCCAGTCAAAGTC 223225 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||| ||| Sbjct 223226 TTCACAAAAATCTGCATGTTG 223246 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || ||||||||||| || ||||| | || | ||| ||| Sbjct 219960 AGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCATCT 220019 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | || || |||||||| || | | ||| ||||| || || || |||||||| || Sbjct 220020 TCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCTTTGTCT 220079 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || |||||||| | |||||| || |||||||| || || || ||| Sbjct 220080 TGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCTACCTCCAGGGTGATGGTC 220139 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| ||||| |||||||| Sbjct 220140 TTGCCTGTGAGAGTTTTGACAAAGATCTGCAT 220171 >seq159 Length=112901 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAA 268750 |||||| || | ||||| || ||||| ||| | || || || |||| ||||||||| Sbjct 34801 AACCCAAATCGTTTTGTCATTTTTCCTATAAAATATCAAGACATCTGGAAAATGTACAAA 34742 Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810 | || | || ||||||||||||| |||||||||||||| ||| | |||||| | | Sbjct 34741 AAAGCAGAGGCATCTTTTTGGACTGCTGAAGAAGTAGATCTTTCTAAAGACTTAGGACAC 34682 Query 268811 TGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCA 268870 ||| | || | || ||||| |||| | ||||| ||| || | | || || ||||| Sbjct 34681 TGGGAGAAGCTGAAGCCAGAGGAAAAACATTTTATTTCTCATGTATTGGCCTTCTTTGCT 34622 Query 268871 GTTAGTGATGGTATCGTTAACGAAAATCTAGTA 268903 | ||||||||| || || || |||||| | ||| Sbjct 34621 GCTAGTGATGGCATTGTCAATGAAAATTTGGTA 34589 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/206 (71%), Gaps = 7/206 (3%) Strand=Plus/Minus Query 269059 AACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATA---- 269114 ||||||| ||||| | ||||| |||| |||||| | ||||| || | | Sbjct 33987 AACTATGCCTTGTGTAAAGAAAAAGGCTGACTGGGCTATACGCTGGATCAATGCCAAAAA 33928 Query 269115 -GCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCG 269173 || || || | |||| || ||| |||||||||| || || ||||| || ||||| || Sbjct 33927 TGCCAGCTTTGCAGAGAGAG-TTA-TTGCTTTTGCTGCAGTGGAAGGGATCTTCTTCTCT 33870 Query 269174 GGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTC 269233 || |||||||| | ||||||||| | ||||||||||| | |||||||| | || ||| Sbjct 33869 GGTTCTTTTGCTTCCATCTTTTGGCTCAAGAAAAGAGGTATCATGCCAGGCCTGACATTC 33810 Query 269234 TCTAACGAATTGATAAGCAGGGACGA 269259 || ||| | || |||||||| || Sbjct 33809 AGCAATGAACTTATCAGCAGGGATGA 33784 >seq2929 Length=2839 Score = 107 bits (118), Expect = 4e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 238603 CCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTA 238662 || || | |||||||||| | ||||| |||||| | ||| | ||||||| ||||| | Sbjct 1780 CCTAGCTGCAAATGGTAAAAGAGGGCAAGATGCATGGATTCCTCAGAATGTACTGGGCAA 1839 Query 238663 AAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGA 238722 | || || || || ||||| || ||| |||| ||| | | | |||||||||||| | Sbjct 1840 AGAAAATCCTGGAGTGGACCAGCAGTCCTGAGGAGGCTTTGAAAATTAGTATTTATCTCA 1899 Query 238723 ACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGT 238769 | |||| || || || ||||| | |||||||| |||||||||||| Sbjct 1900 ATGATAGGTATGAGCTAGACGGAAGAGATCCTAATGGATACGTAGGT 1946 >seq3572 Length=181463 Score = 104 bits (114), Expect = 5e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 238603 CCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTA 238662 || || |||||||||||| | ||||| |||||| | ||| | ||||||| ||||| | Sbjct 84511 CCTAGCTACAAATGGTAAAAGAGGGCAAGATGCATGGATTCCTCAGAATGTACTGGGCAA 84452 Query 238663 AAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGA 238722 | || || || || ||||| | ||| |||| ||| | | | |||||||||||| | Sbjct 84451 AGAAAATCCTGGAGTGGACCACCAGTCCCGAGGAGGCTTTGAAAATTAGTATTTATCTCA 84392 Query 238723 ACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGT 238769 | |||| || || || || || | |||||||| |||||||||||| Sbjct 84391 ATGATAGGTATGAGCTGGATGGAAGAGATCCTAATGGATACGTAGGT 84345 >seq3567 Length=183150 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 78483 CTAGAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCT 78542 ||| ||| | |||||||||||| |||| || | || |||| ||||||||| ||||||| Sbjct 57167 CTAAAGCCCTTTGGTGGTATTATTTCTCAAAGTGCATTGAATTCCTAGATACCATCTTCT 57108 Query 78543 TCATCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTA 78602 | |||| | ||||| |||||| | ||| | |||||||| |||||| || | Sbjct 57107 TTGTCCTGAGGAAGAAGAACAATCAAGTATCATTTTTGCATGTATACCATCATGCCACCA 57048 Query 78603 TGTTTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 ||||| | | | ||||| ||| | |||||| | |||||||| ||| Sbjct 57047 TGTTTCCAATATGGTGGATCGGTGTAAAATGGGTTGCAGGAGGTCAA 57001 >seq125 Length=571510 Score = 89.7 bits (98), Expect = 1e-12 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 78483 CTAGAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCT 78542 ||| ||| | |||||||||||| | || || | || |||| ||||||||| ||||||| Sbjct 421918 CTAAAGCCCTTTGGTGGTATTATTTTTCAAAGTGCATTGAATTCCTAGATACCATCTTCT 421977 Query 78543 TCATCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTA 78602 | || | | ||||| |||||| | ||| | |||||||| |||||| || | Sbjct 421978 TTGTCATGAGGAAGAAGAACAATCAAGTATCATTTTTGCATGTATACCATCATGCCACCA 422037 Query 78603 TGTTTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 ||||| | | | ||||| ||| | |||||| | |||||||| ||| Sbjct 422038 TGTTTCCAATATGGTGGATCGGTGTAAAATGGGTTGCAGGAGGTCAA 422084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151341898721640