Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3215 109 5e-19 seq304 102 7e-17 >seq3215 Length=281622 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||| | || | ||| || || || || | ||| || ||||||| ||| | Sbjct 219957 CGCAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCA 220016 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || || ||||||| || | ||||||||||| ||||| ||||||||| Sbjct 220017 TCTTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCTTTG 220076 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | || || | | | || || || | |||||| Sbjct 220077 TCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCTACCTCCAGGGTGATG 220136 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || |||||||| |||||||||||||| Sbjct 220137 GTCTTGCCTGTGAGAGTTTTGACAAAGATCTGCAT 220171 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||||||||| || | || ||||| || || | ||| || || |||| ||| | | Sbjct 223028 CGCAACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGGCCA 223087 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || ||||||||||| || |||| || | | ||| || || || || || || |||||| Sbjct 223088 TCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTG 223147 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||| || | | || || | | || || |||| || ||| Sbjct 223148 TCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATG 223207 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || ||||| | ||| |||||||| ||||||||| Sbjct 223208 GTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATG 223243 >seq304 Length=94255 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||||||||| || | |||||||| || || | ||| || || |||| ||| | Sbjct 380 CGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTCAGGGTGCGTCCA 439 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || ||||||||||| || |||| || | | ||| || || || || || || |||||| Sbjct 440 TCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGTATCCCCTCTTTG 499 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||| || | | || || | | || || |||| || ||| Sbjct 500 TCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACCTCAAGGGTAATG 559 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || ||||| | ||| |||||||| ||||||||| Sbjct 560 GTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATG 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448269738058800