Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3262 235 9e-58 seq3447 221 2e-53 seq3317 197 2e-46 seq1891 87.8 3e-13 >seq3262 Length=266767 Score = 235 bits (260), Expect = 9e-58 Identities = 199/245 (81%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | | | || || |||||||| || |||||||||||||| || Sbjct 55575 CGCCAAGCGTCACCGCAAAGTTTTGCGTGACAACATCCAGGGTATCACCAAGCCAGCCAT 55516 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| ||||||| |||||||| ||||||||| | |||||| | ||||||| |||| Sbjct 55515 CCGTCGTTTGGCTCGCCGTGGTGGTGTCAAGCGTATTTCTGGACTCATCTATGAGGAGAC 55456 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||||| ||| || |||| ||||||| || ||| ||||| Sbjct 55455 CCGTGGTGTCCTGAAGGTTTTCCTTGAGAATGTCATCCGTGATGCTGTCACCTACACCGA 55396 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| |||||||||| |||||||||||||| Sbjct 55395 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTCGTCTATGCTTTGAAACGTCAAGG 55336 Query 16672 CCGTA 16676 ||||| Sbjct 55335 CCGTA 55331 Score = 235 bits (260), Expect = 9e-58 Identities = 213/268 (79%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | || || || ||||| || |||||||||||||| || Sbjct 178089 CGCCAAGCGTCATCGCAAGGTTTTGCGTGACAATATCCAGGGTATCACCAAGCCAGCCAT 178030 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| ||||||| |||||||| ||||||||| |||||||| | |||||||||||| Sbjct 178029 CCGTCGTTTGGCTCGCCGTGGTGGTGTCAAGCGTATCTCTGGACTCATCTATGAAGAGAC 177970 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | |||||| ||| || |||| ||| || || ||| ||||| Sbjct 177969 CCGTGGTGTCCTGAAGGTGTTCCTCGAGAATGTCATCCGTGACGCCGTCACCTACACCGA 177910 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| |||||||||| |||||||||||||| Sbjct 177909 GCACGCCAAGAGGAAGACAGTCACCGCCATGGATGTCGTCTATGCTTTGAAACGTCAAGG 177850 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || || || || ||||| Sbjct 177849 CCGTACTCTGTACGGATTCGGCGGTTAA 177822 Score = 232 bits (256), Expect = 1e-56 Identities = 197/243 (81%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | | || || |||||||| || |||||||||||||| || Sbjct 193004 CGCCAAGCGTCATCGCAAAGTTTTGCGTGACAACATCCAGGGTATCACCAAGCCAGCCAT 193063 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| | || || |||||||| ||||||||| |||||||| | |||| ||||||| Sbjct 193064 CCGTCGTTTAGCACGCCGTGGTGGTGTCAAGCGTATCTCTGGACTCATCTACGAAGAGAC 193123 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||||| | |||||| ||| || |||| ||| || || ||| ||||| Sbjct 193124 CCGTGGTGTCTTGAAGGTGTTCCTCGAGAATGTCATCCGTGACGCAGTCACCTACACCGA 193183 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| |||||||||| |||||||||||||| Sbjct 193184 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTCGTCTATGCTTTGAAACGTCAAGG 193243 Query 16672 CCG 16674 ||| Sbjct 193244 CCG 193246 Score = 87.8 bits (96), Expect = 3e-13 Identities = 155/227 (68%), Gaps = 17/227 (7%) Strand=Plus/Minus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 ||||| || || |||||||| ||||| |||| | | ||||||| | |||||| |||||| Sbjct 156543 AACATTCAGGGTATCACCAAACCAGCCATCCATTATTTGGCTCGCCATGGTGGTGTCAAG 156484 Query 16523 C-------------GTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGAT 16569 | || |||||||| | ||| |||||||| |||| ||| ||||| | Sbjct 156483 CATATGCTGTAAGCGTATCTCTGGACTTATCTGTGAAGAGACCCGTGGTGTCCTGAAGGT 156424 Query 16570 CTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGAC 16629 |||| ||||| || |||| || | || | | || ||| | | || ||||| Sbjct 156423 GTTCCGCAAGAATGTCATCCG-GACTCCATCACCCACACTGAGAATACCAAG---AAGAC 156368 Query 16630 TGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 |||||| || ||| | ||||||| |||||| | ||||||| || Sbjct 156367 TGTCACTGCCTATGATGTATTCTATGCTTTGAAATGACAAGGCCATA 156321 >seq3447 Length=210637 Score = 221 bits (244), Expect = 2e-53 Identities = 209/267 (78%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | | | || || |||||||| || |||||||||||||| || Sbjct 190642 CGCCAAGCGTCACCGCAAAGTTTTGCGTGACAACATCCAGGGTATCACCAAGCCAGCCAT 190583 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| | ||||| |||||||| ||||||||| | |||||| | ||||||| |||| Sbjct 190582 CCGTCGTTTAGCTCGCCGTGGTGGTGTCAAGCGTATTTCTGGACTCATCTATGAGGAGAC 190523 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||||| ||| || |||| ||||||| || ||| ||||| Sbjct 190522 CCGTGGTGTCCTGAAGGTGTTCCTTGAGAATGTCATCCGTGATGCTGTCACCTACACCGA 190463 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| |||||||||| | ||||||||||| Sbjct 190462 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTCTATGCTCTAAAACGTCAAGG 190403 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||| | ||||| || || |||| Sbjct 190402 CCGTACTCTGTATGGATTCGGCGGTTA 190376 >seq3317 Length=246369 Score = 197 bits (218), Expect = 2e-46 Identities = 174/217 (80%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || |||||||||||||| || |||||| ||||||| |||||||| ||| Sbjct 7277 GACAACATCCAGGGTATCACCAAGCCAGCCATTCGTCGTTTGGCTCGCCGTGGTGGTGTC 7336 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||||| ||| || | ||||| |||||| |||| ||| ||||| | ||||| || Sbjct 7337 AAGCGTGTTTCTAGACTCATCTATTAAGAGACCCGTGGTGTCCTGAAGGTGTTCCTTGAG 7396 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||||| | | | || ||| || |||||||| || | ||||| |||||| || Sbjct 7397 AATGTTATCCGTCACGTCGTCACCTACACAGAGCACGCCAAGAGGAAGACGGTCACCGCC 7456 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 |||||| |||||||||| ||||||||||||||||||| Sbjct 7457 ATGGATGTCGTCTATGCTTTGAAACGTCAAGGCCGTA 7493 >seq1891 Length=384253 Score = 87.8 bits (96), Expect = 3e-13 Identities = 155/227 (68%), Gaps = 17/227 (7%) Strand=Plus/Plus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 ||||| || || |||||||| ||||| |||| | | ||||||| | |||||| |||||| Sbjct 340763 AACATTCAGGGTATCACCAAACCAGCCATCCATTATTTGGCTCGCCATGGTGGTGTCAAG 340822 Query 16523 C-------------GTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGAT 16569 | || |||||||| | ||| |||||||| |||| ||| ||||| | Sbjct 340823 CATATGCTGTAAGCGTATCTCTGGACTTATCTGTGAAGAGACCCGTGGTGTCCTGAAGGT 340882 Query 16570 CTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGAC 16629 |||| ||||| || |||| || | || | | || ||| | | || ||||| Sbjct 340883 GTTCCGCAAGAATGTCATCCG-GACTCCATCACCCACACTGAGAATACCAAG---AAGAC 340938 Query 16630 TGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 |||||| || ||| | ||||||| |||||| | ||||||| || Sbjct 340939 TGTCACTGCCTATGATGTATTCTATGCTTTGAAATGACAAGGCCATA 340985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071698204190