Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq159 102 9e-17 >seq159 Length=112901 Score = 102 bits (112), Expect = 9e-17 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 21861 CCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAA 21920 |||| |||||||| || || |||||||| || ||||| || ||||||| || |||| Sbjct 34591 CCAAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATAA 34650 Query 21921 AATATCGTTCGT-TATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACT 21979 ||| | ||| | | || | | || | ||| | | ||| ||||| || | ||||||| Sbjct 34651 AATGTTTTTCCTCTGGCT-TCAGCTTCTCCCAGTGTCCTAAGTCTTTAGAAAGATCTACT 34709 Query 21980 TCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATAT 22039 ||||||| |||||||| || || ||||| ||||| ||||||| || | |||| Sbjct 34710 TCTTCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATAT 34769 Query 22040 ATTATTGGAAATATTACAAA 22059 |||| ||||| || ||||| Sbjct 34770 TTTATAGGAAAAATGACAAA 34789 Score = 95.1 bits (104), Expect = 1e-14 Identities = 89/113 (79%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 21158 TCTTCtttttt---tGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAA 21214 ||| ||||| | |||||| | ||||||||| ||||| |||| ||||| ||||| ||| Sbjct 32983 TCTCCTTTTGTGGATGACATCACTCCCATTTTCTGATATTCACCAACTCGCTTTTCAAAA 33042 Query 21215 AAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 || || || ||||||||||| ||||| ||||| || |||||||| ||||| Sbjct 33043 AAGTTGGTTTTTCCTTCCAAAGATATGTGCTCCATGAAGTCAAATGGGTTTTC 33095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531875335249200