Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq159 168 8e-37 seq3660 96.9 4e-15 seq1979 91.5 2e-13 >seq159 Length=112901 Score = 168 bits (186), Expect = 8e-37 Identities = 164/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||||||||||||| || || || ||||| || ||||| || ||||||||||| |||| Sbjct 34591 CCAAATTTTCATTGACAATGCCATCACTAGCAGCAAAGAAGGCCAATACATGAGAAATAA 34650 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805 ||| |||||| ||||| | || || | ||| | | |||||||| | |||||||| Sbjct 34651 AATGTTTTTCCTCTGGCTTCAGCTTCTCCCAGTGTCCTAAGTCTTTAGAAAGATCTACTT 34710 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 |||| | |||||||| ||||||||||| ||||| ||||| ||||||||||| | ||||| Sbjct 34711 CTTCAGCAGTCCAAAAAGATGCCTCTGCTTTTTTGTACATTTTCCAGATGTCTTGATATT 34770 Query 33866 GGATTGGGAAAATAACAAATCTATTTGGATT 33896 || || ||||| ||||| | |||||| || Sbjct 34771 TTATAGGAAAAATGACAAAACGATTTGGGTT 34801 Score = 154 bits (170), Expect = 2e-32 Identities = 169/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || || || ||||| ||| || || || || ||||| | || | || | Sbjct 33782 CCTCATCCCTGCTGATAAGTTCATTGCTGAATGTCAGGCCTGGCATGATACCTCTTTTCT 33841 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||||| |||||||| || || ||||| |||||||| ||||| ||||||||||| | Sbjct 33842 TGAGCCAAAAGATGGAAGCAAAAGAACCAGAGAAGAAGATCCCTTCCACTGCAGCAAAAG 33901 Query 33446 CAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGG 33502 |||||| ||||||| || | | ||| || ||| ||||| | |||||| || | Sbjct 33902 CAATAACTCTCTCTGCAAAGCTGGCATTTTTGGCATTGATCCAGCGTATAGCCCAGTCAG 33961 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 |||| || |||||||||||||| ||||| || ||||| |||||| Sbjct 33962 CCTTTTTCTTTACACAAGGCATAGTTTCAATTGCATTGAAGAGA 34005 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| ||||||||||| || |||||||| || || ||||| ||||| || ||||||||| Sbjct 32998 GACATCACTCCCATTTTCTGATATTCACCAACTCGCTTTTCAAAAAAGTTGGTTTTTCCT 33057 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 ||||| ||||| | |||||||| ||||| || || Sbjct 33058 TCCAAAGATATGTGCTCCATGAAGTCAAATGGGTT 33092 >seq3660 Length=165149 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| |||| |||||| || ||||||||||| || || || || || ||||| || |||| Sbjct 75436 CACTGAATACTTTTTTCGTCTCCTTGTGTAGGTTAGAGACAGCAATCCTGGCAGCAAGAA 75377 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 ||||||| || || || | || |||||||| | || || |||||| |||||| Sbjct 75376 TGGCATAGTCTGGGTGCTTGACCGTCATGGTGGCTGCAGTCTCAGCAGCCAGATTGTCCA 75317 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAG 64122 |||||| || || |||||| || | ||| || ||||||| || Sbjct 75316 GTTCTACTGTGGTCACTCCAGGGTACAGTCCACTGATCACCTTCAGAG 75269 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 ||||| ||||| | |||||||||||||| ||||||| || || ||||| ||||| || Sbjct 79202 ATCTCTGTGCACAAGTTACTACACTTGATGGTTCCTAGGTTCTGCTGATTGCTCTTCCTG 79143 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63065 ||||||| ||||| || || ||| | || || || ||||| |||| || ||||| || Sbjct 79142 TTACACGAGTCCTTGTACAGCATGTAAGGCGTGCCTGTTTCTGTCTGGGACTCTATTATG 79083 Query 63066 GCTTTCCA 63073 || | ||| Sbjct 79082 GCATACCA 79075 >seq1979 Length=378058 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 ||||| ||||| | |||||||||||||| ||||| | || || ||||| ||||| || Sbjct 363378 ATCTCTGTGCACAAGTTACTACACTTGATGGTTCCCAGGTTCTGCTGATTGCTCTTCCTG 363319 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63065 ||||||| ||||| || || ||| | || || || ||||| |||| || ||||| || Sbjct 363318 TTACACGAGTCCTTGTACAGCATGTAAGGTGTGCCTGTTTCTGTCTGGGACTCTATTATG 363259 Query 63066 GCTTTCCA 63073 || | ||| Sbjct 363258 GCATACCA 363251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| |||| |||||| || ||||||||||| || || || || || || || || |||| Sbjct 359687 CACTGAATACTTTTTTCGTCTCCTTGTGTAGGTTAGAGACAGCAATCCTCGCAGCAAGAA 359628 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 ||||||| || || || | || ||||| || | || || |||||| |||||| Sbjct 359627 TGGCATAGTCTGGGTGCTTGACCGTCATGGTGGCCGCAGTCTCAGCAGCCAGATTGTCCA 359568 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAG 64122 |||||| || || |||||| || | ||| || ||||||| || Sbjct 359567 GTTCTACTGTGGTCACTCCAGGGTACAGTCCACTGATCACCTTCAGAG 359520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622917376402800