Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3215 132 5e-26 seq1979 113 4e-20 seq3547 111 1e-19 seq304 107 2e-18 seq282 105 6e-18 seq3660 104 2e-17 >seq3215 Length=281622 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||||||||| | ||| | || ||||| || ||||||||||| ||||| Sbjct 219944 GCCACCACGGAGACGCAGCACAAGATGGAGAGTGGACTCTTTCTGAATGTTGTAGTCGCT 220003 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || | |||||| || || |||| ||||||||||| || || || Sbjct 220004 CAAGGTGCGACCATCTTCCAACTGCTTCCCAGCAAAGATCAAACGCTGCTGATCTGGGGG 220063 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || ||| | | || | ||||| | || ||| | Sbjct 220064 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTATCTGAGGGCTCTAC 220123 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || |||||||| || || |||||||| Sbjct 220124 CTCCAGGGTGATGGTCTTGCCTGTGAGAGTTTTGACAAAGATCTGCAT 220171 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||||| ||| ||||| | ||| || || || ||||||||||| || || Sbjct 223015 GCCACCACGTAGACGCAACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACT 223074 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||| || || || | || | ||| || ||||| || || Sbjct 223075 CAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGG 223134 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || |||||||| || || ||| | | || | ||||| | | ||| | Sbjct 223135 TATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTAC 223194 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| ||| || || || | ||| || || |||||||||||| Sbjct 223195 CTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATG 223243 >seq1979 Length=378058 Score = 113 bits (124), Expect = 4e-20 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||| ||||| | |||||| || ||||| |||||||||||||| || ||||||| Sbjct 363389 TGTACTCTACAATCTCTGTGCACAAGTTACTACACTTGATGGTTCCCAGGTTCTGCTGAT 363330 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 | || |||||||| |||| ||||||||| |||||||| ||| ||| || || Sbjct 363329 TGCTCTTCCTGTTACACGAGTCCTTGTACAGCATGTAAGGTGTGCCTGTTTC 363278 >seq3547 Length=186543 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| |||||||| || | || |||||||| || |||||||| ||||| Sbjct 88935 CCACCACGAAGACGGAGCACTAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTG 88994 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| |||||||||||||| || ||| Sbjct 88995 AGGGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGG 89054 Query 131128 ATTCCT 131133 || ||| Sbjct 89055 ATGCCT 89060 >seq304 Length=94255 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||| ||| ||||| | ||| || || || ||||||||||| || || Sbjct 367 GCCACCACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACT 426 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||| || || || | || | ||| || ||||| || || Sbjct 427 CAGGGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGG 486 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || |||||||| || || ||| | | || | ||||| | | ||| | Sbjct 487 TATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTAC 546 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| ||| || || || | ||| || || |||||||||||| Sbjct 547 CTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATG 595 >seq282 Length=97041 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| |||||||| || | || |||||||| || |||||||| ||||| Sbjct 90578 CCACCACGAAGACGGAGCACTAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTG 90637 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || | || |||||||||||||| || ||| Sbjct 90638 AGGGTGCGACCATCCTCAAGCTGCTTGCCAGCAAATATCAAACGCTGCTGGTCTGGGGGG 90697 Query 131128 ATTCCT 131133 || ||| Sbjct 90698 ATGCCT 90703 >seq3660 Length=165149 Score = 104 bits (114), Expect = 2e-17 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||| ||||| | |||||| || ||||| ||||||||||| || || ||||||| Sbjct 79213 TGTACTCTACAATCTCTGTGCACAAGTTACTACACTTGATGGTTCCTAGGTTCTGCTGAT 79154 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 | || |||||||| |||| ||||||||| |||||||| || Sbjct 79153 TGCTCTTCCTGTTACACGAGTCCTTGTACAGCATGTAAGG 79114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471990202387200