Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq304 104 2e-17 seq3215 100 2e-16 seq968 89.7 3e-13 >seq304 Length=94255 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || |||||||||||||||||| || || || ||||| ||||| ||| | Sbjct 368 CCACCACGCAGACGCAACACCAAATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCACTC 427 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | ||||| || ||||| || || |||||||| || | || Sbjct 428 AGGGTGCGTCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGT 487 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || |||||||| ||| || ||||||||| | | |||||| || || Sbjct 488 ATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACC 547 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || || || ||||| || ||||| || ||||||||||| Sbjct 548 TCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATGTT 597 >seq3215 Length=281622 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||||||||||||||| ||| || || ||||| ||||| ||| | Sbjct 223016 CCACCACGTAGACGCAACACCAAATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCACTC 223075 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||||| || ||||| || || |||||||| || | || Sbjct 223076 AGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAAATCAGACGTTGTTGGTCAGGTGGT 223135 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || |||||||| ||| || ||||||||| | | |||||| || || Sbjct 223136 ATCCCCTCTTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTATCTGATGGCTCTACC 223195 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || || || ||||| || ||||| || ||||||||||| Sbjct 223196 TCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCATGTT 223245 >seq968 Length=463622 Score = 89.7 bits (98), Expect = 3e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 |||| || || | ||| || || || | || || || || || ||||| ||||| | Sbjct 57575 ACCCTACTAAGTTTTTTGGTTGTGAGTTGGGTGCCCAAACACAATTTGACTTAAAAAATG 57516 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 |||||||||| || || || | ||| |||||||||| || ||||| || || || |||| Sbjct 57515 AGCGCTTCATTGTGAATGGTGCCCATGACTCTGCCAAACTACAGGATTTGCTGGATGGCT 57456 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACC 6485 |||| ||||||||||| || | || || || || || || ||| Sbjct 57455 TTATCAAGAAGTTTGTGCTCTGCCCAGAGTGTGAAAATCCAGAAACC 57409 Score = 86.0 bits (94), Expect = 4e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 6235 AGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTA 6294 |||| ||||| |||||||| ||||| ||||| ||||||| |||||||||||||| || | Sbjct 57819 AGGTTGAGGGAAAGGGAAATGGTATCAAAACTGTCATTGCAAACATGCCTGAAGTTGCAA 57760 Query 6295 AGGCGCTCGGACGCCCTGCCAC 6316 |||| || ||| | ||| |||| Sbjct 57759 AGGCACTGGGAAGACCTCCCAC 57738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334931565292730